PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0001800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 353aa MW: 38193 Da PI: 8.3162 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 156 | 210 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Spipo16G0001800 156 RKKLRLSKEQSAVLEESFKEHNTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTK 210 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 156 | 245 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Spipo16G0001800 156 RKKLRLSKEQSAVLEESFKEHNTLNPKQKMALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-TL 245 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 6.9E-20 | 2 | 117 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 126 | 213 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-19 | 146 | 213 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 152 | 212 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 154 | 216 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.4E-16 | 156 | 210 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.44E-17 | 156 | 213 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 187 | 210 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00674 | 205 | 243 | No hit | No description |
Pfam | PF02183 | 7.3E-11 | 212 | 245 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.2E-26 | 212 | 255 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTKGDDLALS LSLGGASETH RRPHPLQINP TASPCPAAAT PWDVLLTSSL SEPPRPPEMF 60 LGDAVRPLLK GIGVNQAPAA NRAPDVEEEE EAGLSSPNST VSSVVSGGAG GKRSEREEHL 120 VCRRPNSSSS NGEENDLARP FTRGVSDEED GGDGSRKKLR LSKEQSAVLE ESFKEHNTLN 180 PKQKMALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ 240 ELRTLKLSPQ FYMHMTPPTT LTMCPSCERV AVSSSSSSGP VPTVVSSAPP AADNLGGNAG 300 GGLVHHRPQQ PLQQHHLHHK PTPRHLFPAP AVPIPAAGGA QSLPWPPTPL RS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | SRKKLRL |
2 | 204 | 212 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017623980.1 | 1e-103 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46602 | 3e-87 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2G5CBT7 | 1e-105 | A0A2G5CBT7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_067_00037.1 | 1e-106 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 3e-69 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0001800 |
Publications ? help Back to Top | |||
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