PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0045700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24512.8 Da PI: 9.7834 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.4e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l+++v+ +G g+W++ +++ g++R++k+c++rw++yl Spipo15G0045700 15 RGTWMAEEDEILARYVRVHGEGNWRSLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++ Spipo15G0045700 68 RGNISEQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 112 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.191 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.45E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.233 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.92E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
RMGRNPCCSE EGLNRGTWMA EEDEILARYV RVHGEGNWRS LPKRAGLKRC GKSCRLRWLN 60 YLRPNIKRGN ISEQEEDLIV RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TTLWKKLQGR 120 PLRAPKRRKP LAETSSQLQA PAEPYESQLH LPSGDLQTPT SPSLSHTPKE STVEFVLAEA 180 DDVSQVGAAG RSNGCHWPVQ SVSEEAVRDR AALVDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | RAPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024611.1 | 3e-70 | PREDICTED: transcription factor TT2 | ||||
Refseq | XP_022715268.1 | 2e-70 | transcription repressor MYB6-like | ||||
Swissprot | Q38850 | 1e-61 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A1D1XMB1 | 1e-73 | A0A1D1XMB1_9ARAE; Anthocyanin regulatory C1 protein | ||||
STRING | EOY27233 | 1e-69 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-60 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0045700 |
Publications ? help Back to Top | |||
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