PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0046700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 758aa MW: 79312.2 Da PI: 4.6592 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.8e-07 | 235 | 263 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r+ WT+eEd+ l+ av + G g+W+ I + Spipo14G0046700 235 RKLWTKEEDLELIAAVDKCGEGNWANILK 263 567**********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.061 | 229 | 287 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 231 | 277 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-8 | 233 | 277 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0042 | 234 | 287 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-6 | 235 | 263 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.11E-10 | 238 | 277 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MEGTKRKKGL LREEDVLLLL NKQFYFSHQK GLDDVNGGVF NTQEYDCYNY AVQLCWIKYS 60 PTTILNLLKE VAQSAGPKLD WDTLVKYSNT GISSAREYQM LWRYLAYKTP VLEKLETGAE 120 PLDDDSDLDY ELEAVPTVTS ETSSDAAACV KALISSGLPH ELVTNRPTAE APLSTNTSNG 180 QASYTLSDKQ LARSDRGGNT MMLSVHRQLQ LAAQSTEMVD GNGTVGVTGP AKKKRKLWTK 240 EEDLELIAAV DKCGEGNWAN ILKGDFKHDR TASQLSQVHF FRISPLLKTV PSEFSSDCLP 300 SDSLCLAHGL LFIVETQTQW ISSARFWLDD SLRWSIIRKK RANLNVGSGS NPPGSAPTEA 360 HMATWQAVNM AIKMPIIGAL STRRPGTTGA LQSTDPAGSS APPAGAGSEP VAISSSEVPN 420 QSPQPSNPAT SQKAVPLNPP SKPRVNPKVP AVAVKPLGGP SSIIQAAAIA AGGRIAPPST 480 AASHFKAAQS KNAVHIRPGG ALPSSSIPAP KAPPPVSIRC TKTPISPKEA ATSPLGSKPS 540 THQGACGSSG QPSPSSDAAA PNQPAEQLQP ELSPASPSCA DAEGNEEPRS AAAGVDSSDG 600 SPQAENKTPE EIISCDQEDP VKSMDTDSDD KINVDQIGDC KGPAKSPEAS DPEMAKAENA 660 GDVAECGDGQ AIGGSPAAAA VAADPETAKS EMPFLNTAGK VDGSGDQVDN SEAVAICNED 720 EMAIDITSGK VDGSGNQVGN SEDVAICNED GNETARG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 236 | KKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1YD76 | 0.0 | A0A1D1YD76_9ARAE; Telomeric repeat-binding factor 1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-41 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0046700 |