PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0025600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LSD

Protein Properties

Length: 91aa MW: 9875.81 Da PI: 7.9504

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0025600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	30.7	5.4e-10	18	42	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP A VRC++C+tV Spipo14G0025600 18 CGSCRQLLSYPQHANCVRCTCCQTV 42 ************************9 PP
2	zf-LSD1	38.4	2e-12	56	80	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GAp+VRC++C +V Spipo14G0025600 56 CGKCCILLMYPYGAPAVRCSCCRFV 80 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.8E-13	15	45	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.8E-8	18	42	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-8	54	81	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.1E-10	56	80	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MTTPEALKEL CEMGQMVCGS CRQLLSYPQH ANCVRCTCCQ TVNLVLEAHQ VGNVKCGKCC 60 ILLMYPYGAP AVRCSCCRFV TEIGVRTVLP *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in plant growth and disease resistance. {ECO:0000269\|PubMed:17404758}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273964.1	4e-38	PREDICTED: protein LOL2
Swissprot	Q704V3	9e-32	LOL5_ORYSJ; Protein LOL5
TrEMBL	E0CVZ1	8e-37	E0CVZ1_VITVI; Uncharacterized protein
STRING	VIT_00s0181g00230.t01	1e-37	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-31	lsd one like 2

Link Out ? help Back to Top
Phytozome	Spipo14G0025600