PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0023800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 384aa MW: 41032.5 Da PI: 7.2694 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.3 | 2.7e-34 | 57 | 129 | 2 | 70 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssa 70 +g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + + Spipo14G0023800 57 TGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELEELppwnptdQ---S 129 79**************************************************************76554321...1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-30 | 57 | 120 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.072 | 59 | 117 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEESHRHHLH QYQQQQQQQQ LLQPRHGRPA AQSRLAALKD AVGEIVEVEG GHIVRSTGRK 60 DRHSKVFTAK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKNA KAAIDELEEL 120 PPWNPTDQSP PPLRQEEATN EPPGGPTRKR LPESDPVASS PAFVFGAGNF LPPSLDSDSI 180 ADTIKYFFPV SAAGGGASSP GGGFQSYPSV DLLQRGGSQA QDLRLSLQSF QEPILLHHPQ 240 PPPATAEQSL FTSSSSTALA FDGSSPGWPD LNQRAFSWNA PGENGGGGGG GGFIFSVPPP 300 QAVPLHPVLG QGQFLTQRGP LQSIASPHVR AWTDAAAALQ PAPSFAAAAG GFSGFRVPAR 360 IQGEEEHDGI PRKPSSTSSA SRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-21 | 64 | 117 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-21 | 64 | 117 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390672.1 | 1e-122 | PREDICTED: transcription factor PCF5-like | ||||
Swissprot | Q9MAH8 | 7e-93 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A2H3XHJ8 | 1e-119 | A0A2H3XHJ8_PHODC; transcription factor PCF5-like | ||||
STRING | XP_008783922.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-82 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0023800 |
Publications ? help Back to Top | |||
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