PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0014400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 182aa MW: 19510 Da PI: 7.5714 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.9 | 1.9e-32 | 16 | 69 | 3 | 56 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrr 56 e++l+cprC+stntkfCy+nn+s++qPry+Ck+C r+Wt+GG+lrn+P+Gg+ Spipo14G0014400 16 EQNLPCPRCQSTNTKFCYFNNHSITQPRYLCKGCGRHWTHGGSLRNIPIGGAPP 69 6889**********************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-19 | 16 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-29 | 17 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.024 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 21 | 57 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MQHPTAAAAA AVLVVEQNLP CPRCQSTNTK FCYFNNHSIT QPRYLCKGCG RHWTHGGSLR 60 NIPIGGAPPE EHQARRRSNN RPAVIPTAVP QPQPPLYHPN IEATSSLYAS TAEIDHLMLN 120 MTGSFTALLS SDSVFHNVVD NFQEEPAFLA PRGISSVGYT TLDLLSFPSG GASTPPPPPT 180 P* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 1e-26 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0014400 |