PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo14G0007000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 304aa MW: 33912.6 Da PI: 6.3343 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 82 | 135 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe+++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Spipo14G0007000 82 KKRRLRTDQVQSLERSFEMENKLEPERKLRLAKELGLQPRQVAIWFQNRRARWK 135 5568899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.7 | 1e-40 | 81 | 172 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl ++qv++LE+sFe+e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlE+dye+L+++y +l+++ e+L ke+e+Lr+e+ Spipo14G0007000 81 EKKRRLRTDQVQSLERSFEMENKLEPERKLRLAKELGLQPRQVAIWFQNRRARWKTKQLERDYEVLQSSYSSLRANYEALAKEKEKLRSEVI 172 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-19 | 64 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-19 | 73 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-16 | 80 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-16 | 82 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.12E-15 | 82 | 138 | No hit | No description |
PRINTS | PR00031 | 1.6E-5 | 108 | 117 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 117 | 133 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-16 | 137 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MAERRVYGGS NMAEFLPIDG ISRESIVAFL ASGASSGVRG PGSMLKFEDA PGGAPERSLY 60 RRGESEEAGD DDLEEHPHQP EKKRRLRTDQ VQSLERSFEM ENKLEPERKL RLAKELGLQP 120 RQVAIWFQNR RARWKTKQLE RDYEVLQSSY SSLRANYEAL AKEKEKLRSE VIALTEKLLL 180 KEKGRSGSPP RQEPRTHSLL QRRDPPASTA AAAASELRHH PLVTGKQEDL SATNSGVLDG 240 DSPHHSDRGW SSPAVEPTSS STAALELDNS DRSPAADDDA EEARRLPNFG FAADHSFWLW 300 PSY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 129 | 137 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020679790.1 | 5e-87 | homeobox-leucine zipper protein HAT5 isoform X1 | ||||
Swissprot | Q02283 | 4e-53 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1D1ZAM7 | 1e-106 | A0A1D1ZAM7_9ARAE; Homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_010242341.1 | 2e-85 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16055 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-50 | homeobox 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo14G0007000 |
Publications ? help Back to Top | |||
---|---|---|---|
|