PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo13G0033400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 109aa MW: 12122 Da PI: 9.2573 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 112.3 | 2.3e-35 | 36 | 90 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m vkgLtl+h+kSHLQkYRl Spipo13G0033400 36 KPRLRWTAELHERFVDAVNQLGGPDKATPKTIMRTMAVKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-34 | 33 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.451 | 33 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.17E-19 | 35 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-25 | 36 | 91 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-9 | 38 | 89 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
AFLVWSCCPG GEDMFAREEY RGPLGDACLV LTTDPKPRLR WTAELHERFV DAVNQLGGPD 60 KATPKTIMRT MAVKGLTLYH LKSHLQKYRL GTKSKEVSDS PKDGRAIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-22 | 36 | 89 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-22 | 36 | 89 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-22 | 36 | 89 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-22 | 36 | 89 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264109.1 | 4e-45 | PREDICTED: protein PHR1-LIKE 3-like isoform X1 | ||||
Swissprot | Q94A57 | 1e-43 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A1D1XSR8 | 2e-49 | A0A1D1XSR8_9ARAE; Myb family transcription factor APL | ||||
STRING | XP_010264109.1 | 2e-44 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20734 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo13G0033400 |
Publications ? help Back to Top | |||
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