PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0033400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 109aa    MW: 12122 Da    PI: 9.2573
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0033400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like112.32.3e-353690155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt eLHerFv+av+qLGG++kAtPkti+++m vkgLtl+h+kSHLQkYRl
  Spipo13G0033400 36 KPRLRWTAELHERFVDAVNQLGGPDKATPKTIMRTMAVKGLTLYHLKSHLQKYRL 90
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-343393IPR009057Homeodomain-like
PROSITE profilePS5129411.4513393IPR017930Myb domain
SuperFamilySSF466897.17E-193593IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-253691IPR006447Myb domain, plants
PfamPF002495.1E-93889IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
AFLVWSCCPG GEDMFAREEY RGPLGDACLV LTTDPKPRLR WTAELHERFV DAVNQLGGPD  60
KATPKTIMRT MAVKGLTLYH LKSHLQKYRL GTKSKEVSDS PKDGRAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-223689154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-223689154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-223689154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-223689154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264109.14e-45PREDICTED: protein PHR1-LIKE 3-like isoform X1
SwissprotQ94A571e-43PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1D1XSR82e-49A0A1D1XSR8_9ARAE; Myb family transcription factor APL
STRINGXP_010264109.12e-44(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2073467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.14e-46G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]