PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0014600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Nin-like
Protein Properties Length: 988aa    MW: 108991 Da    PI: 7.8017
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0014600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK37.64.2e-12683724152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+isl++l++yFs+++kdAAk++g           q+GI+RWP+Rki+++
  Spipo13G0014600 683 AEKNISLSTLQQYFSGSLKDAAKSIG----------GQHGISRWPSRKINKV 724
                      589*********************99..........69************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
SuperFamilySSF481135.22E-132167IPR010255Haem peroxidase
PROSITE profilePS5087313.1512268IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.520.105.6E-132368No hitNo description
PROSITE patternPS0043605465IPR019794Peroxidase, active site
ProDomPD0103615.0E-2869130IPR002675Ribosomal protein L38e
PfamPF017812.5E-3169132IPR002675Ribosomal protein L38e
PfamPF020422.7E-9686724IPR003035RWP-RK domain
SuperFamilySSF542776.45E-20888972No hitNo description
SMARTSM006661.2E-23888970IPR000270PB1 domain
PROSITE profilePS5174523.209888970IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.9E-21889969No hitNo description
PfamPF005641.3E-17889969IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004601Molecular Functionperoxidase activity
GO:0005515Molecular Functionprotein binding
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MSPRAILPGL LFLSFLCSCR GQLQFGFYAN SCPDAEATVR SVVTDAFNSD VNTASGLLRL  60
HFHDCIVDPK QIHEIKDFLL TARRKDARSV KIKRSKDVVK FKVRCSRYLY TLCVFDSEKA  120
DKLKQSLPPG SACHVPPRIQ PEIQDPEKDP SRPVTQSYCF FLQISDRAPR KRKIWQLLLK  180
FRSGFVPFGL LAGSSVTRRE KPAPERSNMR FGFSSNSSGM DNSGNNSSSS GAFENYPHVR  240
TSVVPRSLGS SLSLADRMLK ALSLFKESST GGILAQVWMP VKQRDEFVLS TSEQPYLLDQ  300
ILAGYREISR TFTFSPKEGS GCFQGLPGRV FTSKAPEWTS NVSYYSKNEY LRVNHALAHE  360
VRGSLALPVF DTTEGSCCAV LELVTTKEKP NFDPEMDTVC KALQAVNLRT VRAQEHNQQV  420
TKSQRVAFVE IVDVLRAVCH AHMLPLALTW TPCCYDDEKS SGYRENAHRD RSESCLKSLM  480
LHVQESACYV NDSRMLGFVH ACSEHHLKKG QGVAGKAFES NFPFFSADIK EYDIHEYPFV  540
HHARRFGLHA AVAIRLRSAH TGNDDYILEF FLPVNCRGSV EQQLLLDNLS STMQRICKSL  600
RTVSNAEVMA SGSGSIDFQQ GWSGYPVENM PRHQHQPVKP SMVSSLSASM NLQEGSDERE  660
THLDQVMGGG SRAAHLEKKR STAEKNISLS TLQQYFSGSL KDAAKSIGGQ HGISRWPSRK  720
INKVNRSLKK IQTVIDSVQG VEGSLKYDPV TGSFIAAVTS SDRPAVRAIQ PMLCEAAPPP  780
FQGKPEAVEC AKPGRINLSG ADRVDSGGMG FFPAQDEAPP TAWEASGKWS SPVTAADDGG  840
DPGERADQNH LSSSGMTDSS NASESSSQTF KMGFTGGDHD GDPGGAAAIT VKATYREDTV  900
RFKFSPEMGC LQLLEEIGRR FKLATGTFQL KYMDDEEEWV LLVNDDDLRE SIEILDFSGT  960
RSLKVLVRDL PCSIGSSASS NFLPTEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Ln5e-326913026360S ribosomal protein L38
4v7e_Ck5e-326913026360S ribosomal protein L38E
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237190.10.0PREDICTED: protein NLP9-like
RefseqXP_020252999.10.0LOW QUALITY PROTEIN: protein NLP2-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A1D1ZI320.0A0A1D1ZI32_9ARAE; Protein NLP2
STRINGXP_008237190.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]