PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0066300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 249aa MW: 27436.9 Da PI: 6.673 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.1 | 9.3e-29 | 192 | 242 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt eLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQ Spipo12G0066300 192 KQRLRWTLELHEQFVEAVRKLDGPEKATPKSVLKLMDVEGLTIYHVKSHLQ 242 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.032 | 189 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-14 | 190 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 190 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-22 | 192 | 244 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-8 | 194 | 245 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
THKKRKALQK KGLCPAILLP RFSRSSTFCT SQFSSSSPVS EAAHSQLKIL PFLPSLPKTE 60 QPTSSAQSSS SPLILRGSLR SVSGESDDPD ALIKGLLNLS QDASDGSFHE ENYANDCVTF 120 DERLELQILS DELGMAIAGS EESPRLDEIY DKPQMLSKSN EISQPEAQHD GPTNHALTCS 180 AHSTSGSTHT NKQRLRWTLE LHEQFVEAVR KLDGPEKATP KSVLKLMDVE GLTIYHVKSH 240 LQVLLRICF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 192 | 242 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020245886.1 | 3e-65 | protein PHOSPHATE STARVATION RESPONSE 3 isoform X1 | ||||
Refseq | XP_020245964.1 | 7e-66 | protein PHOSPHATE STARVATION RESPONSE 3 isoform X2 | ||||
Swissprot | Q6YXZ4 | 2e-54 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A1D1XI38 | 6e-80 | A0A1D1XI38_9ARAE; Myb family transcription factor APL | ||||
STRING | GSMUA_Achr10P23260_001 | 3e-61 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 4e-44 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0066300 |
Publications ? help Back to Top | |||
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