PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0022900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 163aa MW: 18062.7 Da PI: 9.9801 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.8 | 2.9e-34 | 48 | 102 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHe+Fv+av+qLGG+++AtPk il++m+vkgLt++hvkSHLQkYRl Spipo12G0022900 48 RQRLRWTHELHECFVDAVSQLGGPDRATPKGILRVMGVKGLTIYHVKSHLQKYRL 102 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.194 | 45 | 105 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-33 | 47 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-18 | 47 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-26 | 49 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.2E-10 | 50 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-9 | 134 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MYQPNPASRL NLIPSSLIVH DQRGEMSGNA VIPGNGGRNL NNSTLASRQR LRWTHELHEC 60 FVDAVSQLGG PDRATPKGIL RVMGVKGLTI YHVKSHLQKY RLAKYLPESS PDGIKAEQKE 120 PGSLLSTLEN SSGIQITEAL KLQMEVQKRL HEQLEDKFRV IS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-25 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-25 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-25 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-25 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00628 | PBM | Transfer from PK10342.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942496.1 | 4e-74 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 6e-62 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1D1YRS5 | 1e-80 | A0A1D1YRS5_9ARAE; Myb family transcription factor APL | ||||
STRING | XP_008782978.1 | 3e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-64 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0022900 |