PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0012000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 315aa    MW: 34562.3 Da    PI: 4.5633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0012000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-20106159356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le  Fe ++++  e++ eLAkklgL+ rqV +WFqNrRa++k
  Spipo12G0012000 106 KKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYK 159
                      5678*************************************************9 PP

2HD-ZIP_I/II130.47e-42105196192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl+ eqv++LE+sFe+e+kLepe+K+ela++Lglqprqva+WFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L +++++Lr+++ 
  Spipo12G0012000 105 EKKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYKTKQLERDFDRLKSSYDSLLADHDSLLNDNHRLRSQIL 196
                      69**************************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1983163IPR009057Homeodomain-like
PROSITE profilePS5007117.621101161IPR001356Homeobox domain
SMARTSM003892.5E-19104165IPR001356Homeobox domain
PfamPF000468.8E-18106159IPR001356Homeobox domain
CDDcd000861.07E-18106162No hitNo description
Gene3DG3DSA:1.10.10.604.7E-20107168IPR009057Homeodomain-like
PRINTSPR000311.5E-6132141IPR000047Helix-turn-helix motif
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PRINTSPR000311.5E-6141157IPR000047Helix-turn-helix motif
PfamPF021835.7E-17161203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLGAMKRKIG LDGSASEVNT EIFKDSRRMI FDYTSSSSSS TSPGNILILG GRSKSGFGGG  60
GGRSALLLEE ARFGSAAAVA NWPSNYDPSI TDEDYYYYDD KMLPEKKRRL TPEQVQMLEM  120
SFEAENKLEP EKKSELAKKL GLQPRQVAIW FQNRRARYKT KQLERDFDRL KSSYDSLLAD  180
HDSLLNDNHR LRSQILSLTE KLQAKGSPAV TAAAAAAGSN SDGDPQPVVL GPAKADDQLS  240
TGTVVDQEGP HHLMDSGDSD LPEDAGSYDG GCGVVQSEME EGSDVEGSRV FNFCNDVPED  300
QELIWSTMHC WEWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913582.13e-75homeobox-leucine zipper protein HOX16
SwissprotQ022831e-54HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1D1ZIR05e-84A0A1D1ZIR0_9ARAE; Homeobox-leucine zipper protein HAT5
STRINGXP_008781998.13e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-53homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]