PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0012000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 315aa MW: 34562.3 Da PI: 4.5633 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2e-20 | 106 | 159 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le Fe ++++ e++ eLAkklgL+ rqV +WFqNrRa++k Spipo12G0012000 106 KKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYK 159 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.4 | 7e-42 | 105 | 196 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE+sFe+e+kLepe+K+ela++Lglqprqva+WFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L +++++Lr+++ Spipo12G0012000 105 EKKRRLTPEQVQMLEMSFEAENKLEPEKKSELAKKLGLQPRQVAIWFQNRRARYKTKQLERDFDRLKSSYDSLLADHDSLLNDNHRLRSQIL 196 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 83 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-19 | 104 | 165 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.8E-18 | 106 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-18 | 106 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 107 | 168 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-6 | 132 | 141 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-6 | 141 | 157 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.7E-17 | 161 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MLGAMKRKIG LDGSASEVNT EIFKDSRRMI FDYTSSSSSS TSPGNILILG GRSKSGFGGG 60 GGRSALLLEE ARFGSAAAVA NWPSNYDPSI TDEDYYYYDD KMLPEKKRRL TPEQVQMLEM 120 SFEAENKLEP EKKSELAKKL GLQPRQVAIW FQNRRARYKT KQLERDFDRL KSSYDSLLAD 180 HDSLLNDNHR LRSQILSLTE KLQAKGSPAV TAAAAAAGSN SDGDPQPVVL GPAKADDQLS 240 TGTVVDQEGP HHLMDSGDSD LPEDAGSYDG GCGVVQSEME EGSDVEGSRV FNFCNDVPED 300 QELIWSTMHC WEWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RRARYKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913582.1 | 3e-75 | homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q02283 | 1e-54 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1D1ZIR0 | 5e-84 | A0A1D1ZIR0_9ARAE; Homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_008781998.1 | 3e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-53 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0012000 |
Publications ? help Back to Top | |||
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