PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0061900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 315aa MW: 33918.8 Da PI: 7.0442

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0061900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.9	2.7e-34	98	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav+qLGGsekAtPk +l+lm v+gLt++hvkSHLQkYR+ Spipo11G0061900 98 KPRIRWTPELHERFVEAVSQLGGSEKATPKGVLKLMRVDGLTIYHVKSHLQKYRT 152 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.598	95	155	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-18	96	152	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-32	97	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	98	152	IPR006447	Myb domain, plants
Pfam	PF00249	8.7E-10	102	151	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-22	185	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGQIQSHAMV GSASRARQND WPDWVSSDSL GGSWNDYVLR TDAPLAESKA LYPAASHLLV 60 QMTAPPQPQF YQQMPSNSGG VSAANGSLSS GSSGPPTKPR IRWTPELHER FVEAVSQLGG 120 SEKATPKGVL KLMRVDGLTI YHVKSHLQKY RTARFRPDSS EGAPETNLAP LEGLSSVDQG 180 TGLGITEALR LQMEVQKKLH EQLEVQRKLQ LQIEEQGKYL QIIFETQRKM ENGGHNPRST 240 LDSTASATAA TNETPGRVGA AAADPEPAGE SSAGAGAEQR RVNPESPHEL DSVPSEAWPS 300 PPRGKRPRQG DVHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-29	98	156	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262509.1	2e-82	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A1D1YDK3	3e-89	A0A1D1YDK3_9ARAE; Myb family transcription factor APL
STRING	XP_010262509.1	9e-82	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1971	37	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-65	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Spipo11G0061900