PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0051800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 218aa MW: 23410.4 Da PI: 8.0493 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 109.5 | 1.7e-34 | 8 | 64 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++lkcprCdstntkfCyynnys sqPr+fCkaC+r+Wt+GG+lrnvPvGg r+ + Spipo11G0051800 8 KAELKCPRCDSTNTKFCYYNNYSRSQPRHFCKACKRHWTAGGTLRNVPVGGCRKAGR 64 6789*********************************************98665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-21 | 7 | 64 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-30 | 10 | 62 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.972 | 11 | 65 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 13 | 49 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MADPLRQKAE LKCPRCDSTN TKFCYYNNYS RSQPRHFCKA CKRHWTAGGT LRNVPVGGCR 60 KAGRRPRTPH QPSSGKQTIK LPLSFPQEIF YPQPDFPDCG YMGSLPLHHG GIPATETETG 120 GGGCSFPVFL NLLGPEDLPP PPPAAAPWDL LQPTQPSFST VTTASSCQTA AESSSPPSSS 180 GCWDDLTGFL FSPLLEHPPP PPPPGLCQSK YSSSPAE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966121 | 7e-34 | EU966121.1 Zea mays clone 291888 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727686 | 7e-34 | KJ727686.1 Zea mays clone pUT5625 C2C2-DOF transcription factor (DOF34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1ZLD5 | 1e-36 | A0A1D1ZLD5_9ARAE; Dof zinc finger protein DOF3.6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 4e-30 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0051800 |