PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0033100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37597.9 Da PI: 6.51 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.4e-53 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eelv++yL+kkv+++ ++l +vik+vd+y++ePwdL+ + ++ e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ Spipo11G0033100 7 VPPGFRFHPTEEELVDYYLRKKVASTGIDL-DVIKDVDLYRIEPWDLQdAcRIGDeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKP 99 69****************************.9***************943444332556*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++s k++lvg++ktLvfy+grap+g+k+d +mheyrle Spipo11G0033100 100 IHS-KHTLVGMRKTLVFYRGRAPNGQKSDYIMHEYRLE 136 ***.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-59 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.532 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MNTFMHVPPG FRFHPTEEEL VDYYLRKKVA STGIDLDVIK DVDLYRIEPW DLQDACRIGD 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI HSKHTLVGMR KTLVFYRGRA 120 PNGQKSDYIM HEYRLETNEN ATVQEEGWVV CRVFKKRIPA TSKGNEQEPP CWFEDHFHFP 180 TDLSSPVAQY NHHAYPSRKR ETEFHQHLRQ EAFLELPQLE SPKIPSDVNP GSSLHIPFPM 240 GEEETVERGG HRQMISPHGS RCNNTAHAAE ELMDWRVLDK FVASQLSQDN ASGEQNHIFH 300 APSSQEPAID YPSTSTSSSQ IDLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 3 | 160 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 3 | 160 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 3 | 160 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 3 | 160 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 3 | 160 | 16 | 172 | NAC domain-containing protein 19 |
4dul_A | 9e-49 | 3 | 160 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 3 | 160 | 13 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941123.1 | 1e-147 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-116 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A2H3ZEN3 | 1e-145 | A0A2H3ZEN3_PHODC; NAC domain-containing protein 7-like | ||||
STRING | XP_008812366.1 | 1e-145 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-108 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0033100 |
Publications ? help Back to Top | |||
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