PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0032300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 18454.5 Da PI: 4.7106 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 13 | 36 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 + W++Ia++++ gRt++++k++w+++ Spipo11G0032300 13 R-WSKIAARLP-GRTDNEIKNHWNTH 36 4.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.608 | 1 | 41 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-9 | 12 | 43 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-13 | 12 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-8 | 12 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-8 | 13 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MTSPPICIIV TTRWSKIAAR LPGRTDNEIK NHWNTHIKKK LVKLGIDPLT HEPLNKKLGS 60 LGPASESSDD QPPATGKVAH HTSAESASQH SEAPTTMDSL LDDDFPLVGS PWPSSEADGS 120 SAGMPAWDGE SDADWLLDYQ QLSVLEFGLE NLFGGDAREP ESKCHLPLTY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217388.1 | 3e-32 | protein ODORANT1 | ||||
TrEMBL | A0A1D1XF57 | 3e-40 | A0A1D1XF57_9ARAE; Protein ODORANT1 | ||||
STRING | XP_008810422.1 | 2e-30 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12350.1 | 1e-23 | myb domain protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0032300 |