PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0027600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 358aa MW: 40076.6 Da PI: 7.5335

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0027600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.6e-20	22	76	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t+eq+++Le++F+++++p++++r+eL ++l+L+e+qVk+WFqNrR+ +k Spipo11G0027600 22 KRLHRHTPEQIQQLEAFFKECPHPDENQRKELCRRLSLEEQQVKFWFQNRRTLMK 76 455789*********************************************9776 PP
2	START	93	5.8e-30	164	346	2	164
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvkka aeep+W + +n+de++ f++s + + a++a+ +v + +l l+d + +W ++ + +t Spipo11G0027600 164 LALSAMEELVKKARAEEPLWDRRGageeAALNEDEYRWAFPQSLRprpagFVTAASKATEMVMISSSTLIDALMDAN-RWPGIFPnvvaRSSTA 256 6899**************9998898899******88766999999**********************.88777777777* PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskv 164 vis g g lqlm+aelq+lsplvp R+ f+R++++l g+w++vdvSv + p+ +s ++lpSg+++e+ +ng+skv Spipo11G0027600 257 HVISAGiggtrnGRLQLMTAELQVLSPLVPlRELSFLRFCKELAHGVWAVVDVSVGTVGEDPSsPHSPLDYRRLPSGCMVEDIANGYSKV 346 ***************************************************666655554444455569**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-21	9	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.17E-19	9	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.844	18	78	IPR001356	Homeobox domain
SMART	SM00389	8.1E-17	19	82	IPR001356	Homeobox domain
CDD	cd00086	1.15E-16	20	76	No hit	No description
Pfam	PF00046	1.8E-17	22	76	IPR001356	Homeobox domain
PROSITE profile	PS50848	26.343	154	346	IPR002913	START domain
SuperFamily	SSF55961	2.93E-16	157	346	No hit	No description
CDD	cd08875	7.65E-75	159	346	No hit	No description
Pfam	PF01852	1.6E-23	164	346	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSSGDLRDDG RDSDNPPRKK KKRLHRHTPE QIQQLEAFFK ECPHPDENQR KELCRRLSLE 60 EQQVKFWFQN RRTLMKVMTQ LERQENALLK QENERLRMEN RALHAAARSP VCRSCGGGAE 120 LNESLWLENA RLKEELHRCS GALAGRQPPH TETSSLEISA LVDLALSAME ELVKKARAEE 180 PLWDRRGAGE EAALNEDEYR WAFPQSLRPR PAGFVTAASK ATEMVMISSS TLIDALMDAN 240 RWPGIFPNVV ARSSTAHVIS AGIGGTRNGR LQLMTAELQV LSPLVPLREL SFLRFCKELA 300 HGVWAVVDVS VGTVGEDPSS PHSPLDYRRL PSGCMVEDIA NGYSKVLQRK PVLAGDE*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSSGDLRDDG RDSDNPPRKK KKRLHRHTPE QIQQLEAFFK ECPHPDENQR KELCRRLSLE  60
EQQVKFWFQN RRTLMKVMTQ LERQENALLK QENERLRMEN RALHAAARSP VCRSCGGGAE  120
LNESLWLENA RLKEELHRCS GALAGRQPPH TETSSLEISA LVDLALSAME ELVKKARAEE  180
PLWDRRGAGE EAALNEDEYR WAFPQSLRPR PAGFVTAASK ATEMVMISSS TLIDALMDAN  240
RWPGIFPNVV ARSSTAHVIS AGIGGTRNGR LQLMTAELQV LSPLVPLREL SFLRFCKELA  300
HGVWAVVDVS VGTVGEDPSS PHSPLDYRRL PSGCMVEDIA NGYSKVLQRK PVLAGDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	23	PRKKKKRL
2	17	22	RKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795402.1	1e-119	homeobox-leucine zipper protein ROC5
Refseq	XP_022156145.1	1e-119	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	1e-113	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1D1XY19	1e-131	A0A1D1XY19_9ARAE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRING	Aquca_013_00387.1	1e-118	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-114	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo11G0027600

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]