PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0017600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TALE
Protein Properties Length: 160aa    MW: 18649.8 Da    PI: 5.4012
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0017600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.4e-08951381454
                      HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  Spipo11G0017600  95 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 138
                      5555555222469*****************************87 PP
2ELK28.72.9e-105980122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     ELK++L++++++++ ++++E++
  Spipo11G0017600 59 ELKNELKQGFRSRIEDVREEIL 80
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.5515979IPR005539ELK domain
PfamPF037891.2E-45980IPR005539ELK domain
PROSITE profilePS5007111.74279142IPR001356Homeobox domain
SMARTSM003897.5E-1181146IPR001356Homeobox domain
SuperFamilySSF466892.22E-1681146IPR009057Homeodomain-like
CDDcd000862.73E-1182143No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2686145IPR009057Homeodomain-like
PfamPF059203.6E-1899138IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDEGVTLEEG TGATMSDDED ELQLDYGLDG DGEIHDMTGF GPLMPTESER TLMERVRQEL  60
KNELKQGFRS RIEDVREEIL RKRRAGKLPG DTTSILKQWW QQHSKWPYPT EDDKAKLVEE  120
TGLQLKQINN WFINQRKRNW HSNSQSATTL KSKRKRTWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1382147873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135155RKRNWHSNSQSATTLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933995.13e-96homeobox protein knotted-1-like 3
SwissprotP466061e-89HD1_BRANA; Homeobox protein HD1
TrEMBLA0A1D1ZFI01e-101A0A1D1ZFI0_9ARAE; Homeobox protein knotted-1-like 3 (Fragment)
STRINGXP_010676578.11e-94(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.17e-91KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]