PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0011300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 357aa    MW: 38672.4 Da    PI: 5.6297
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0011300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.28.1e-091557238
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     e+r C+ +++ ++ lfC+ ++ +lC  C +  H g       H+
  Spipo10G0011300 15 EARECDSCKSSPALLFCRADSAFLCGACDVRVH-GanklasrHE 57
                     5789***************************99.4466666676 PP
2zf-B_box24.84.5e-0859104342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Spipo10G0011300  59 VWMCEVCEQAPAAVTCKADAAALCLTCDADIHSAnplarrHERVPV 104
                      689*****************************66899999999986 PP
3CCT70.54.1e-24284327144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Spipo10G0011300 284 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 327
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5371461IPR000315B-box-type zinc finger
SMARTSM003361.6E-141461IPR000315B-box-type zinc finger
PfamPF006433.1E-71558IPR000315B-box-type zinc finger
CDDcd000217.84E-101961No hitNo description
PROSITE profilePS5011910.73657104IPR000315B-box-type zinc finger
PfamPF006434.2E-659104IPR000315B-box-type zinc finger
CDDcd000216.95E-960104No hitNo description
SMARTSM003365.4E-1062104IPR000315B-box-type zinc finger
PfamPF062032.3E-18284326IPR010402CCT domain
PROSITE profilePS5101716.896284326IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGERVEGKS YWGMEARECD SCKSSPALLF CRADSAFLCG ACDVRVHGAN KLASRHERVW  60
MCEVCEQAPA AVTCKADAAA LCLTCDADIH SANPLARRHE RVPVVPFFES PAVDKSGEET  120
DLLLKPVGEE GNNDESEEAA SWLLPNSNSF AGNHHQKVAV EAPEIKGGEY LFSEVDRYLD  180
LECASSMDGS NHQADSVVPV QAKIAVPAVH LPPFFAPDGG LDYDFSRSKP SSGSYSTVPS  240
LSHSMSSSDV GVVPDVSAMA DITNPYGAAV VVQSTAQVAV GLDREARVMR YREKRKNRKF  300
EKTIRYASRK AYAETRPRIK GRFAKRTEID TEMDHIFSSP AATLVVDSGY GLVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-142zinc finger protein CONSTANS-LIKE 4
SwissprotQ9FHH83e-97COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLW0S0220.0W0S022_LEMAE; CONSTANS-like protein
STRINGXP_008789696.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-80CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]