PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo10G0006800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 297aa MW: 33016.6 Da PI: 9.3072

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo10G0006800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.3	1.5e-53	12	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL++k++++ ++ ++i++vd++++ePwdLp k+k +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke++ Spipo10G0006800 12 LPPGFRFHPTDEELLLHYLAHKISDSGFTG-RAIADVDLNRCEPWDLPGKAKMGEKEWYFFSLQDRKYPTGVRRNRATEAGYWKTTGKDKEIFG 104 79***********************999.89***********99999************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 elvg+kktLvfykgrap+gekt+Wvmheyrl Spipo10G0006800 105 GatVLELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 140 6333445*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-62	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	59.261	12	161	IPR003441	NAC domain
Pfam	PF02365	3.6E-28	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGEASEGEAH SLPPGFRFHP TDEELLLHYL AHKISDSGFT GRAIADVDLN RCEPWDLPGK 60 AKMGEKEWYF FSLQDRKYPT GVRRNRATEA GYWKTTGKDK EIFGGATVLE LVGMKKTLVF 120 YKGRAPRGEK TNWVMHEYRL LPKSTSKNRN DEWVVCRLFK KRSEVKKSPT NQSRLGMTAH 180 AMSLRTKGDQ LLHHNIGGIG WTYADLVGLT TGLCGAPAMD CLSRSQWSYG GTTAALLPAP 240 NEAQHVPRLP TALPQLHVAG GTQRPAGLTD INVDDGRVRF QQIQQCVDLD GYWMSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-57	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-57	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-57	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-57	11	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-57	11	167	19	174	NAC domain-containing protein 19
3swm_B	4e-57	11	167	19	174	NAC domain-containing protein 19
3swm_C	4e-57	11	167	19	174	NAC domain-containing protein 19
3swm_D	4e-57	11	167	19	174	NAC domain-containing protein 19
3swp_A	4e-57	11	167	19	174	NAC domain-containing protein 19
3swp_B	4e-57	11	167	19	174	NAC domain-containing protein 19
3swp_C	4e-57	11	167	19	174	NAC domain-containing protein 19
3swp_D	4e-57	11	167	19	174	NAC domain-containing protein 19
4dul_A	3e-57	11	167	16	171	NAC domain-containing protein 19
4dul_B	3e-57	11	167	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269\|PubMed:10079219, ECO:0000269\|PubMed:10750709, ECO:0000269\|PubMed:12163400, ECO:0000269\|PubMed:12492830, ECO:0000269\|PubMed:12610213, ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15500463, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16798887, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:17122068, ECO:0000269\|PubMed:17251269, ECO:0000269\|PubMed:17287247, ECO:0000269\|PubMed:9212461}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16854978, ECO:0000269\|PubMed:17251269, ECO:0000269\|PubMed:17287247}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983483.1	2e-96	PREDICTED: NAC domain-containing protein 100
Swissprot	O04017	7e-77	NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBL	A0A2G5DKS1	4e-97	A0A2G5DKS1_AQUCA; Uncharacterized protein
STRING	Aquca_018_00116.1	7e-98	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-87	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Spipo10G0006800

Publications ? help Back to Top
Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014. 5: p. 165 [PMID:24817871] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Vialette-Guiraud AC, et al. A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids. Front Plant Sci, 2015. 6: p. 1239 [PMID:26793217] Cui X, et al. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nat. Genet., 2016. 48(6): p. 694-9 [PMID:27111035] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374] Biot E, et al. Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 2016. 143(18): p. 3417-28 [PMID:27387872] Zheng M, et al. Chloroplast Translation Initiation Factors Regulate Leaf Variegation and Development. Plant Physiol., 2016. 172(2): p. 1117-1130 [PMID:27535792] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] González-Carranza ZH, et al. HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS ONE, 2017. 12(9): p. e0185106 [PMID:28934292] Wilson-Sánchez D,Martínez-López S,Navarro-Cartagena S,Jover-Gil S,Micol JL Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves. New Phytol., 2018. 217(3): p. 1307-1321 [PMID:29139551] Gonçalves B, et al. GDP-L-fucose is required for boundary definition in plants. J. Exp. Bot., 2017. 68(21-22): p. 5801-5811 [PMID:29186469] Sha S, et al. To be serrate or pinnate: diverse leaf forms of yarrows (Achillea) are linked to differential expression patterns of NAM genes. Ann. Bot., 2018. 121(2): p. 255-266 [PMID:29267935] Maugarny-Calès A, et al. Dissecting the pathways coordinating patterning and growth by plant boundary domains. PLoS Genet., 2019. 15(1): p. e1007913 [PMID:30677017]