PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0185600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 400aa    MW: 43975.2 Da    PI: 6.9414
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0185600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.13.9e-24126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++
  Spipo0G0185600 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTE 216
                     89****************************996555555..89***********************************************..559 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  Spipo0G0185600 217 NGELCVGIRRA 227
                     999******97 PP
2Auxin_resp119.42.8e-39295378183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++++vFevvY+Prast+eF+vk++ v++al++ +++GmRfkmafetedss++++ +Gtv++v+++dpvrWp+S+Wr+L+
  Spipo0G0185600 295 AANLAANGQVFEVVYYPRASTPEFCVKAAAVRAALRIDWCPGMRFKMAFETEDSSRISWfMGTVSSVQCADPVRWPDSPWRLLQ 378
                     7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37119230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29122228IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-22125226No hitNo description
PROSITE profilePS5086313.197126228IPR003340B3 DNA binding domain
PfamPF023622.7E-22126227IPR003340B3 DNA binding domain
SMARTSM010191.5E-21126228IPR003340B3 DNA binding domain
PfamPF065071.2E-33295378IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MITFSDFPSE ITMKESDRCL DPQLWHACAG GMVQMPAVSS LVCYFPQGQA EHAQGPVDFP  60
TCPRIPPYIL CRVAGVKYLA DPETDEVYAK MRLAPVRSEE LDYGGGEDLG GLGSNGSGVP  120
EKTTSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTILAKD VHGEIWKFRH  180
IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRTENGEL CVGIRRAKRG PGGGLELPSG  240
WNIPGGNCLP PPYAGFSLFL REQENKLMRR NGENPGSVGG MIARGRVRPE SVVEAANLAA  300
NGQVFEVVYY PRASTPEFCV KAAAVRAALR IDWCPGMRFK MAFETEDSSR ISWFMGTVSS  360
VQCADPVRWP DSPWRLLQCR IEENDLLFAS LLVQFYLCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-762038351372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7ZKL20.0A0A1U7ZKL2_NELNU; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-169auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]