PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0178900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 293aa    MW: 33053.8 Da    PI: 8.1587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0178900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.49.5e-2278457128
             NAM  57 ewyfFskrdkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +fF++ +k+y+tg+rk+r+++     + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Spipo0G0178900   7 SKHFFHRPSKAYTTGTRKRRKVQtleggETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 84 
                     569*****************75556655778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.6841103IPR003441NAC domain
SuperFamilySSF1019413.01E-234103IPR003441NAC domain
PfamPF023651.3E-7984IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
VTKDGLSKHF FHRPSKAYTT GTRKRRKVQT LEGGETRWHK TGKTRPVMAN GRQKGCKKIL  60
VLYTNFGKHR KPEKTNWVMH QYHLGQLEEE KEGELVVSKI FYQTQPRQCS WTADKGVAIT  120
ADAMEHVRDN GSASSSSKEA VNQRDEMSSG GGISGYSAAG VQQMNSDSFS FSPFEKSFDQ  180
VVMGEASASV GGEVASRPFK KHEEHEHHPH VLREQEGRTA SAFHVIRPCD SIIAAVLPPA  240
PVHESSMVLD DSYVVSRMLF NNDKFQETTI PSSDETEWLK YSYWPDTDNR DHH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656245.11e-113PREDICTED: NAC domain-containing protein 8 isoform X2
SwissprotQ9M0F82e-71NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U7ZB071e-112A0A1U7ZB07_NELNU; uncharacterized protein LOC104588253 isoform X2
TrEMBLA0A438IHM41e-112A0A438IHM4_VITVI; NAC domain-containing protein 75
TrEMBLA5BJQ51e-112A5BJQ5_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02880.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-59NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]