PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0167800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 31637.7 Da PI: 8.2866 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l d+v+ +G g W+ +++ g++R++k+c++rw++yl Spipo0G0167800 14 RGAWSAQEDKILTDYVQTHGEGKWRDLPEKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l ++++++lG++ W++Ia +++ gRt++++k++w++ Spipo0G0167800 67 RGNISEDEEDLMIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNHWNTN 111 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.223 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.07E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.2 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRKPCCSKV GLNRGAWSAQ EDKILTDYVQ THGEGKWRDL PEKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SEDEEDLMIR LHRLLGNRWS LIAGRLPGRT DNEIKNHWNT NLGKRASPSV 120 SPQPGAREIP MSLKKKTSAV GSTSPLAGSV HGVIRTKAVR CTRSLLSTPK KAPSMAPPAD 180 NDDGSLNFLG DLNVDEFMQS FREIDFPNDD YLSSAASSPL QQHFLIGGEV LEGCGRSSTL 240 PGSTMDASQA SKQEEGQLWG RCSDDHGFPV ELNPLFLPAS EDFYWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391459.1 | 2e-84 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q9FJA2 | 2e-66 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | M0SCR1 | 4e-83 | M0SCR1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P07940_001 | 6e-84 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-68 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0167800 |