PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0158000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32473.4 Da    PI: 10.4381
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0158000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-1888140456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Spipo0G0158000  88 KRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 140
                     447999**********************************************9 PP

2HD-ZIP_I/II129.81.1e-4186176191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     e+krrl+ eqvk+LE++Fe+ +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkd+++Lkr+++a+k+en++L++++++L++e+
  Spipo0G0158000  86 ERKRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDFDVLKRQFEAVKAENDALHSHNKKLQAEV 176
                     69**************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1972144IPR009057Homeodomain-like
PROSITE profilePS5007117.37882142IPR001356Homeobox domain
SMARTSM003893.0E-1785146IPR001356Homeobox domain
CDDcd000869.39E-1687143No hitNo description
PfamPF000462.2E-1588140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-1994141IPR009057Homeodomain-like
PRINTSPR000311.1E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5122138IPR000047Helix-turn-helix motif
PfamPF021832.8E-13142176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
RRRQMSCNGM AQSFFGAGFL LQMQTPQGEE PPPPPSLSPL FAGDPAAAHD FHGVATMLGK  60
RSMSFSGVEE GSGEGDLSDD CSQGAERKRR LNVEQVKTLE KNFEMGNKLE PERKMQLARA  120
LGLQPRQIAI WFQNRRARWK TKQLEKDFDV LKRQFEAVKA ENDALHSHNK KLQAEVPLSL  180
SLVSLLHPHH GSSNPQRVSK DGKGRAGTHD MVVSPELKVY SSSQTSHRRR SVPSNNGGGD  240
GAVKLRHREK HGRHEWPFRW EEIYGHPPQH HADHRAPSWR GLNNEWGGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERKRRL
2134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297871e-79AC229787.1 Oryza minuta clone OM__Ba0057D03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780741.11e-83homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8LC031e-65ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2H3XA492e-82A0A2H3XA49_PHODC; homeobox-leucine zipper protein HOX21-like isoform X2
STRINGXP_008797128.12e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-55HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]