PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0158000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 32473.4 Da PI: 10.4381 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 88 | 140 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Spipo0G0158000 88 KRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 140 447999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 86 | 176 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+krrl+ eqvk+LE++Fe+ +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkd+++Lkr+++a+k+en++L++++++L++e+ Spipo0G0158000 86 ERKRRLNVEQVKTLEKNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDFDVLKRQFEAVKAENDALHSHNKKLQAEV 176 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-19 | 72 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-17 | 85 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.39E-16 | 87 | 143 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 88 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 94 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 113 | 122 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 122 | 138 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-13 | 142 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
RRRQMSCNGM AQSFFGAGFL LQMQTPQGEE PPPPPSLSPL FAGDPAAAHD FHGVATMLGK 60 RSMSFSGVEE GSGEGDLSDD CSQGAERKRR LNVEQVKTLE KNFEMGNKLE PERKMQLARA 120 LGLQPRQIAI WFQNRRARWK TKQLEKDFDV LKRQFEAVKA ENDALHSHNK KLQAEVPLSL 180 SLVSLLHPHH GSSNPQRVSK DGKGRAGTHD MVVSPELKVY SSSQTSHRRR SVPSNNGGGD 240 GAVKLRHREK HGRHEWPFRW EEIYGHPPQH HADHRAPSWR GLNNEWGGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | ERKRRL |
2 | 134 | 142 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229787 | 1e-79 | AC229787.1 Oryza minuta clone OM__Ba0057D03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008780741.1 | 1e-83 | homeobox-leucine zipper protein HOX21-like isoform X2 | ||||
Swissprot | Q8LC03 | 1e-65 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2H3XA49 | 2e-82 | A0A2H3XA49_PHODC; homeobox-leucine zipper protein HOX21-like isoform X2 | ||||
STRING | XP_008797128.1 | 2e-80 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-55 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0158000 |
Publications ? help Back to Top | |||
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