PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0146700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 23661.9 Da PI: 8.7842 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F ++r++ ++ LA++lgL+ +qV vWFqNrRa++k Spipo0G0146700 41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWK 94 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.8 | 7e-39 | 41 | 132 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE++F +e+kLe+ rKv la+eLgl+p+qvavWFqnrRAR+k+kqlE++y +Lk+ ++a++ e+++Le+ev +L+e+l+e Spipo0G0146700 41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWKSKQLEEEYVRLKSMHEAVVLEKCHLEAEVLKLKEQLSE 132 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.099 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-15 | 39 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-14 | 41 | 97 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 41 | 94 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 41 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 43 | 102 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.9E-5 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-5 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSEAAHLEDK MLLSAQLPEG ERSRARRRRR KGRGEAAGEA KKRRLSDEQV KFLEMNFGRE 60 RKLESGRKVY LATELGLDPK QVAVWFQNRR ARWKSKQLEE EYVRLKSMHE AVVLEKCHLE 120 AEVLKLKEQL SEARKEMKKV SASGSSDDVS CGERGSSSPS SSFSVEAQQP LLGELGVERG 180 AELMFMHDYY YDNCVNIMDW PNLYGM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 43 | RRRRKGRGEAAGEAKKRR |
2 | 28 | 43 | RRKGRGEAAGEAKKRR |
3 | 88 | 96 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905085.1 | 1e-64 | homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q7XI85 | 9e-48 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A1D1YT25 | 4e-77 | A0A1D1YT25_9ARAE; Homeobox-leucine zipper protein ATHB-21 | ||||
STRING | XP_008795628.1 | 7e-61 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 1e-41 | homeobox 53 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0146700 |
Publications ? help Back to Top | |||
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