PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0143900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 376aa    MW: 41627.9 Da    PI: 8.9126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0143900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.8e-53171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv +yLk+kv++k+l++ e i+++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ 
  Spipo0G0143900  17 LPGFRFHPTDEELVGFYLKRKVQQKPLSI-ELIRQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSe 110
                     69***************************.89***************9888999***************************************95 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Spipo0G0143900 111 GAKCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 143
                     5566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-5816174IPR003441NAC domain
PROSITE profilePS5100557.53216174IPR003441NAC domain
PfamPF023657.3E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDERNSDVTE KADEMILPGF RFHPTDEELV GFYLKRKVQQ KPLSIELIRQ LDIYKYDPWD  60
LPKMATTGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE GAKCIGLKKS  120
LVFYRGRAAK GVKTDWMMHE FRLPSHADSS LPRGQADKGV HPNDSWAICR IFKKTNSMAR  180
RAPPHPWASA SPGTPAAADL FAHSRGLQFP HQLASKNDSC ATEHGPQAQF GGHAGVLHHH  240
QLQPLLDFTP SSSYRPIVGM GYSKPPVTVP SSAGFFFPPA EAAPSAGIDF GLQQRYQHPP  300
PQQLFGSAPE IAVEISGHLG NGEPGSSHWG TLQTIAFPFS ISSHPPDFLK SHQTWDSAAC  360
PSEMSTGYSV NKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541818019171NO APICAL MERISTEM PROTEIN
1ut4_B5e-541818019171NO APICAL MERISTEM PROTEIN
1ut7_A5e-541818019171NO APICAL MERISTEM PROTEIN
1ut7_B5e-541818019171NO APICAL MERISTEM PROTEIN
3swm_A6e-541817722171NAC domain-containing protein 19
3swm_B6e-541817722171NAC domain-containing protein 19
3swm_C6e-541817722171NAC domain-containing protein 19
3swm_D6e-541817722171NAC domain-containing protein 19
3swp_A6e-541817722171NAC domain-containing protein 19
3swp_B6e-541817722171NAC domain-containing protein 19
3swp_C6e-541817722171NAC domain-containing protein 19
3swp_D6e-541817722171NAC domain-containing protein 19
4dul_A5e-541818019171NAC domain-containing protein 19
4dul_B5e-541818019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083440.11e-147putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLA0A1D1Z4351e-149A0A1D1Z435_9ARAE; Protein FEZ
STRINGXP_008784123.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-104NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]