PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0121600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 360aa    MW: 40061.7 Da    PI: 6.3207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0121600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.3e-51161451129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yL+kkv+g+k++l +++k+vd++++ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Spipo0G0121600  16 VPPGFRFHPTEEELLDYYLRKKVAGEKVDL-DIMKDVDLNRLEPWDIQEkcRIGSaPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 109
                     69***************************9.99**************952433333556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +  + + +g++ktLvfy+grap+g+k+dW+mheyrle
  Spipo0G0121600 110 YG-GVKRIGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 145
                     **.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-578178IPR003441NAC domain
PROSITE profilePS5100556.68616178IPR003441NAC domain
PfamPF023653.1E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
AGMGEMSITV NGESRVPPGF RFHPTEEELL DYYLRKKVAG EKVDLDIMKD VDLNRLEPWD  60
IQEKCRIGSA PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKAIY GGVKRIGMRK  120
TLVFYRGRAP NGQKSDWIMH EYRLEESRDE GSYSTSCSPL VEADTPEEGW VVCRVFKKKS  180
HCRVPESSTS KSSSSLPGAA KTKEIFRSYS EGTLDQIIQF LSRSCKHENE FPIAKLPPLE  240
NPSVASLPFG YPPLVGQSSY LQDSIHVLLS VDQGYNEGSE VNDWAALDRL VASHLNGQSS  300
CPEEQGAFSF CPTINGLLYG GGVGDSQEYH PADMNLWAFT RSPDSDSPST SRRQSATVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-471618317170NO APICAL MERISTEM PROTEIN
1ut4_B1e-471618317170NO APICAL MERISTEM PROTEIN
1ut7_A1e-471618317170NO APICAL MERISTEM PROTEIN
1ut7_B1e-471618317170NO APICAL MERISTEM PROTEIN
3swm_A1e-471618320173NAC domain-containing protein 19
3swm_B1e-471618320173NAC domain-containing protein 19
3swm_C1e-471618320173NAC domain-containing protein 19
3swm_D1e-471618320173NAC domain-containing protein 19
3swp_A1e-471618320173NAC domain-containing protein 19
3swp_B1e-471618320173NAC domain-containing protein 19
3swp_C1e-471618320173NAC domain-containing protein 19
3swp_D1e-471618320173NAC domain-containing protein 19
4dul_A1e-471618317170NAC domain-containing protein 19
4dul_B1e-471618317170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180KKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777853.11e-134NAC domain-containing protein 43
SwissprotQ84WP61e-112NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2H3X3Q61e-133A0A2H3X3Q6_PHODC; NAC domain-containing protein 43
STRINGXP_008777853.11e-134(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-101NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]