PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0121500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 280aa MW: 29782.5 Da PI: 7.2146 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7e-39 | 13 | 70 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Spipo0G0121500 13 QLLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRI 70 6789***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 13 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 14 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.46 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 17 | 53 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEKIPGGPAS DGQLLRCPRC DSSNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV 60 GGGCRKNKRI RKSTAAPTAA LPSQAELSAP VPPLSFLPSS SSISTASADI GFLFYNLATS 120 APDVGLPGLP APYDLSLGFP SNTEDEYLPR LNPVAAPLQS YSLFGNQPMS STTSACLLSS 180 SFKDPQHNEE AMENRQLSAF SDIHQLAADG SPPIFKDVKP LCGTNGVMTG SANGRSDWEL 240 PSCENAVDFP LYWNAAASAL GGGLWPDSAN YGFSIAPLI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966121 | 1e-45 | EU966121.1 Zea mays clone 291888 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727686 | 1e-45 | KJ727686.1 Zea mays clone pUT5625 C2C2-DOF transcription factor (DOF34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779534.1 | 4e-60 | dof zinc finger protein DOF1.4-like | ||||
Refseq | XP_008779535.1 | 4e-60 | dof zinc finger protein DOF1.4-like | ||||
Refseq | XP_008779536.1 | 4e-60 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A2H3X7M2 | 9e-59 | A0A2H3X7M2_PHODC; dof zinc finger protein DOF1.4-like | ||||
STRING | XP_008779534.1 | 2e-59 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0121500 |