PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0110800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 346aa    MW: 39435.1 Da    PI: 8.0478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0110800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM185.51.2e-57221481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL+kkv+++k+e+ ++i evd++++ePwdL +++k +ekewyfF++rd+ky+tg r+nrat sgyWkatgkdke+++ 
  Spipo0G0110800  22 LPPGFRFHPTDEEIITHYLTKKVANNKFEA-RAIGEVDLNRCEPWDLSSRAKMGEKEWYFFCQRDRKYPTGMRTNRATGSGYWKATGKDKEIYKG 115
                     79***************************9.89**************999999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ lvg+kktLvfykgrapkgekt+Wvmheyrl
  Spipo0G0110800 116 RNCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 148
                     999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6417173IPR003441NAC domain
PROSITE profilePS5100560.26922173IPR003441NAC domain
PfamPF023652.9E-3023148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVSSIKVEEM PSMEMDGEPL ELPPGFRFHP TDEEIITHYL TKKVANNKFE ARAIGEVDLN  60
RCEPWDLSSR AKMGEKEWYF FCQRDRKYPT GMRTNRATGS GYWKATGKDK EIYKGRNCLV  120
GMKKTLVFYK GRAPKGEKTN WVMHEYRLDG TSSHYNLPRD TKDSWVVCRV FHKSAGLKKA  180
PFAEEPRVDS IRMGLQSEED YFTSPSMPSL LDSPRYNPHS DEHSYLLDDG DGDFKAIPSS  240
SSYPSYLQAS MDMGNFQAFK GSILHHNPQP NLYNTQKSPI SYPQSPLPHN YHSLDSSPNA  300
SVFHQERNHN VTFHENSILR GAAAVRSHFN LSTGGAPPEN RFEHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-552017915171NO APICAL MERISTEM PROTEIN
1ut4_B7e-552017915171NO APICAL MERISTEM PROTEIN
1ut7_A7e-552017915171NO APICAL MERISTEM PROTEIN
1ut7_B7e-552017915171NO APICAL MERISTEM PROTEIN
3swm_A7e-552017918174NAC domain-containing protein 19
3swm_B7e-552017918174NAC domain-containing protein 19
3swm_C7e-552017918174NAC domain-containing protein 19
3swm_D7e-552017918174NAC domain-containing protein 19
3swp_A7e-552017918174NAC domain-containing protein 19
3swp_B7e-552017918174NAC domain-containing protein 19
3swp_C7e-552017918174NAC domain-containing protein 19
3swp_D7e-552017918174NAC domain-containing protein 19
4dul_A7e-552017915171NAC domain-containing protein 19
4dul_B7e-552017915171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663949.11e-113NAC domain-containing protein 92-like
SwissprotQ9FK441e-95NAC87_ARATH; NAC domain-containing protein 87
TrEMBLB9SHJ61e-111B9SHJ6_RICCO; NAC domain-containing protein 21/22, putative
STRINGXP_002525465.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-98Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]