PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0110800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39435.1 Da PI: 8.0478 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 185.5 | 1.2e-57 | 22 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL+kkv+++k+e+ ++i evd++++ePwdL +++k +ekewyfF++rd+ky+tg r+nrat sgyWkatgkdke+++ Spipo0G0110800 22 LPPGFRFHPTDEEIITHYLTKKVANNKFEA-RAIGEVDLNRCEPWDLSSRAKMGEKEWYFFCQRDRKYPTGMRTNRATGSGYWKATGKDKEIYKG 115 79***************************9.89**************999999*****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+kktLvfykgrapkgekt+Wvmheyrl Spipo0G0110800 116 RNCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 148 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 17 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.269 | 22 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-30 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVSSIKVEEM PSMEMDGEPL ELPPGFRFHP TDEEIITHYL TKKVANNKFE ARAIGEVDLN 60 RCEPWDLSSR AKMGEKEWYF FCQRDRKYPT GMRTNRATGS GYWKATGKDK EIYKGRNCLV 120 GMKKTLVFYK GRAPKGEKTN WVMHEYRLDG TSSHYNLPRD TKDSWVVCRV FHKSAGLKKA 180 PFAEEPRVDS IRMGLQSEED YFTSPSMPSL LDSPRYNPHS DEHSYLLDDG DGDFKAIPSS 240 SSYPSYLQAS MDMGNFQAFK GSILHHNPQP NLYNTQKSPI SYPQSPLPHN YHSLDSSPNA 300 SVFHQERNHN VTFHENSILR GAAAVRSHFN LSTGGAPPEN RFEHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-55 | 20 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-55 | 20 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-55 | 20 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-55 | 20 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-55 | 20 | 179 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-55 | 20 | 179 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-55 | 20 | 179 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021663949.1 | 1e-113 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 1e-95 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | B9SHJ6 | 1e-111 | B9SHJ6_RICCO; NAC domain-containing protein 21/22, putative | ||||
STRING | XP_002525465.1 | 1e-112 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 4e-98 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0110800 |
Publications ? help Back to Top | |||
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