PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0099600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 283aa    MW: 30840.7 Da    PI: 8.9743
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0099600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36e-3288141255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Spipo0G0099600  88 PRMRWTTSLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 141
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1585142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2886142IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2388141IPR006447Myb domain, plants
PfamPF002491.4E-789140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTGAAGGGIP FVSGQPDLSL WISPPMVSPG GTENPSGREG LTLAMLAGDG NCAADDLDHH  60
HRHLQILSKG FKRYPRSSAG GRRSVRAPRM RWTTSLHAHF VHAVELLGGH ERATPKSVLE  120
LMNVKDLTLA HVKSHLQMYR TVKSTDRRAG HVLPDSSSNQ TTVMAGNMEG SFPCGRDQLT  180
GPYTPSPPTP PAPRAHHPSM EENGWSPASH LRCKGFPDDD AKEERQDSPS NVWGRRRPSP  240
SSEGEGPSSV LQRLPNLEFT LGRPSWQMDR VEPMKEFALL RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255045.12e-62PREDICTED: probable transcription factor KAN4 isoform X1
TrEMBLA0A1D1YLY94e-78A0A1D1YLY9_9ARAE; Putative transcription factor KAN4
STRINGXP_010255045.16e-62(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-38G2-like family protein