PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0094200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 33977.3 Da PI: 9.0841 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.6 | 2.5e-32 | 99 | 152 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Spipo0G0094200 99 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 152 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.31E-15 | 96 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-29 | 97 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-24 | 99 | 152 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-7 | 100 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSNTGTISTL HLRSQQLQQF PHHQDLGQLL RPIRGIPLYH HHNAATLPFL QYHHHHLHHQ 60 QQPLCDSAST TGAALFMPQG LARTRFQSRL PAKRNMRAPR MRWTSTLHAR FVHAVELLGG 120 HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDRPP VSSGEPGHSD GFDNGSAGEL 180 SDDNLVDLSS RGCQSSSVHQ GRPGMNHDAD PCSLWSNSSR PHMGMKPLAS ISENKMPTLR 240 VFVYSRGGWM HCKPRDSRNG SISPLEKEAE HHEGFEVGCD LNSSCLTEAS SMKPNLEFTL 300 GRPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272637.1 | 6e-86 | PREDICTED: probable transcription factor KAN2 | ||||
TrEMBL | A0A1D1ZHR9 | 1e-119 | A0A1D1ZHR9_9ARAE; Putative transcription factor KAN2 (Fragment) | ||||
STRING | XP_010276829.1 | 2e-78 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0094200 |