PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0094200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 305aa    MW: 33977.3 Da    PI: 9.0841
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0094200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-3299152255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Spipo0G0094200  99 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 152
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-1596153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-2997152IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-2499152IPR006447Myb domain, plants
PfamPF002494.7E-7100151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSNTGTISTL HLRSQQLQQF PHHQDLGQLL RPIRGIPLYH HHNAATLPFL QYHHHHLHHQ  60
QQPLCDSAST TGAALFMPQG LARTRFQSRL PAKRNMRAPR MRWTSTLHAR FVHAVELLGG  120
HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDRPP VSSGEPGHSD GFDNGSAGEL  180
SDDNLVDLSS RGCQSSSVHQ GRPGMNHDAD PCSLWSNSSR PHMGMKPLAS ISENKMPTLR  240
VFVYSRGGWM HCKPRDSRNG SISPLEKEAE HHEGFEVGCD LNSSCLTEAS SMKPNLEFTL  300
GRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16100154357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272637.16e-86PREDICTED: probable transcription factor KAN2
TrEMBLA0A1D1ZHR91e-119A0A1D1ZHR9_9ARAE; Putative transcription factor KAN2 (Fragment)
STRINGXP_010276829.12e-78(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-51G2-like family protein