PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0093000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 364aa MW: 40641.1 Da PI: 6.3231

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0093000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.9	3.9e-57	18	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL++kv ++ ++ +i e+d++++ePwdLp+k+k +ekewyfF+krdkky+tg+r+nrat+sgyWkatgkdke++ k Spipo0G0093000 18 LPPGFRFHPTDEEIITHYLREKVMNNIFNS-IAIGEADLNRCEPWDLPSKAKMGEKEWYFFCKRDKKYPTGTRTNRATESGYWKATGKDKEIFYK 111 79***********************999.78***********99999************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 k++lvg+kktLvfy+grapkg+kt+Wvmheyrle Spipo0G0093000 112 gKSSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 146 67778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-63	13	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.791	18	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-30	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
VATGATQEAP MGDNFMDLPP GFRFHPTDEE IITHYLREKV MNNIFNSIAI GEADLNRCEP 60 WDLPSKAKMG EKEWYFFCKR DKKYPTGTRT NRATESGYWK ATGKDKEIFY KGKSSLVGMK 120 KTLVFYRGRA PKGQKTNWVM HEYRLEGKFS GYDPPGTSND EWVVCRVFHK STGPKTRPTP 180 ELERIDSFGA LLSSADDRFT YNGDGRDVKA ISTAMLNPSY LASTVPMEYP RDPQRDFFTN 240 NNGELNSGLP SQEVILYPQG ATGLPGHLSP SSGNAGYMHQ EMNPGFASQT TATAFRSHTK 300 VEQYSNQSFV SASQDTGLST DMNTEISSDI SKRDVGVSRS YEDPHYPSSS AAPADDFVSF 360 WEF*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

VATGATQEAP MGDNFMDLPP GFRFHPTDEE IITHYLREKV MNNIFNSIAI GEADLNRCEP  60
WDLPSKAKMG EKEWYFFCKR DKKYPTGTRT NRATESGYWK ATGKDKEIFY KGKSSLVGMK  120
KTLVFYRGRA PKGQKTNWVM HEYRLEGKFS GYDPPGTSND EWVVCRVFHK STGPKTRPTP  180
ELERIDSFGA LLSSADDRFT YNGDGRDVKA ISTAMLNPSY LASTVPMEYP RDPQRDFFTN  240
NNGELNSGLP SQEVILYPQG ATGLPGHLSP SSGNAGYMHQ EMNPGFASQT TATAFRSHTK  300
VEQYSNQSFV SASQDTGLST DMNTEISSDI SKRDVGVSRS YEDPHYPSSS AAPADDFVSF  360
WEF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-52	16	172	18	170	NAC domain-containing protein 19
3swm_B	2e-52	16	172	18	170	NAC domain-containing protein 19
3swm_C	2e-52	16	172	18	170	NAC domain-containing protein 19
3swm_D	2e-52	16	172	18	170	NAC domain-containing protein 19
3swp_A	2e-52	16	172	18	170	NAC domain-containing protein 19
3swp_B	2e-52	16	172	18	170	NAC domain-containing protein 19
3swp_C	2e-52	16	172	18	170	NAC domain-containing protein 19
3swp_D	2e-52	16	172	18	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620729.1	1e-120	NAC domain-containing protein 100-like
Refseq	XP_021663949.1	1e-120	NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-100	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1D1Z405	1e-135	A0A1D1Z405_9ARAE; NAC domain-containing protein 100 (Fragment)
STRING	cassava4.1_010179m	1e-119	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-103	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Spipo0G0093000

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]