PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0092800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38258.2 Da PI: 8.057 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.5e-52 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+++v + ++++ ++i+evdiyk++PwdLp+k+ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk +l + Spipo0G0092800 8 LPPGFRFHPTDEELILYYLRNQVISLPCPV-SIIAEVDIYKFNPWDLPAKAMFGDREWYFFSPRDRKYPNGMRPNRAAASGYWKATGTDKVILMS 101 79****************************.89***************888889***************************************99 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykgr pkg+kt+W+m+eyrl Spipo0G0092800 102 gpQKENIGVKKALVFYKGRPPKGVKTNWIMNEYRL 136 888899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-63 | 5 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.801 | 8 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-26 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MTNPEAQLPP GFRFHPTDEE LILYYLRNQV ISLPCPVSII AEVDIYKFNP WDLPAKAMFG 60 DREWYFFSPR DRKYPNGMRP NRAAASGYWK ATGTDKVILM SGPQKENIGV KKALVFYKGR 120 PPKGVKTNWI MNEYRLVDSP DAKPNRRHTK HLDSMRLDDW VLCRIYRRPN GGSVSSSSED 180 CFETNPQDSH FPVGPWAAPA AADVKLPKSF SSELLHDADY SVLSRLLYEN QLGISTPELS 240 YHLGHATLNG QSLPHAGEDN SVDVPGESPS VIGNCQKRQR TSADYLGAVG ASSLDQPKRC 300 NGACKSYTAS AYQMDESPPR CSVLTQPFLH QNIMLTSNLG FQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-68 | 2 | 168 | 9 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-68 | 2 | 168 | 9 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-68 | 2 | 168 | 9 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-68 | 2 | 168 | 9 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-68 | 2 | 168 | 12 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-68 | 2 | 168 | 9 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-68 | 2 | 168 | 9 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793367.1 | 1e-101 | NAC transcription factor 29-like | ||||
Swissprot | Q84TD6 | 1e-86 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A1D1Z9K1 | 1e-113 | A0A1D1Z9K1_9ARAE; NAC domain-containing protein 29 | ||||
STRING | XP_008793367.1 | 1e-101 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-90 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0092800 |
Publications ? help Back to Top | |||
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