PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0077100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 345aa MW: 38599.4 Da PI: 7.6772

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0077100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.9	1.8e-48	17	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL+ kveg+++++ + i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ Spipo0G0077100 17 MPGFRFHPTEEELVEFYLRWKVEGRRFSV-DLITYLDLYRYDPWELPAFATIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAEG 110 79*************************.99***********8777899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy g+apkg++t W+m+eyrl Spipo0G0077100 111 SRPIGLKKTLVFYYGKAPKGVRTCWIMNEYRL 142 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-56	15	162	IPR003441	NAC domain
PROSITE profile	PS51005	54.633	16	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-23	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNNREDGGDG HEQDVVMPGF RFHPTEEELV EFYLRWKVEG RRFSVDLITY LDLYRYDPWE 60 LPAFATIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRAEG SRPIGLKKTL 120 VFYYGKAPKG VRTCWIMNEY RLPHNESDRS KKAEISLCRV YKRAGIADHH LPGTISSKPS 180 TSSRAMGAAK KQSHPETSIQ SPAGESSSDK EKMGAASPAP PLLQTSTAYS AVDPVAAAPL 240 SSTTTEEDAT PFQQSKDMGD LLPPPCRLLN SFSSSMPAAT VDELNRVVGY HHSYLPETPN 300 QLSHLLLSQS QLPPLTSLPT SQSVFTDKIW EWNPSVPDSY TGFK*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNNREDGGDG HEQDVVMPGF RFHPTEEELV EFYLRWKVEG RRFSVDLITY LDLYRYDPWE  60
LPAFATIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRAEG SRPIGLKKTL  120
VFYYGKAPKG VRTCWIMNEY RLPHNESDRS KKAEISLCRV YKRAGIADHH LPGTISSKPS  180
TSSRAMGAAK KQSHPETSIQ SPAGESSSDK EKMGAASPAP PLLQTSTAYS AVDPVAAAPL  240
SSTTTEEDAT PFQQSKDMGD LLPPPCRLLN SFSSSMPAAT VDELNRVVGY HHSYLPETPN  300
QLSHLLLSQS QLPPLTSLPT SQSVFTDKIW EWNPSVPDSY TGFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	18	163	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	18	163	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	18	163	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	18	163	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	5e-55	18	163	19	165	NAC domain-containing protein 19
4dul_B	5e-55	18	163	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907545.3	1e-137	NAC domain-containing protein 35
Swissprot	Q9ZVP8	4e-98	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1D1Z6P4	1e-142	A0A1D1Z6P4_9ARAE; Protein FEZ (Fragment)
STRING	XP_008804076.1	1e-134	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-100	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Spipo0G0077100

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]