PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0076300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24430.7 Da PI: 9.5847 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.1 | 6.4e-31 | 7 | 84 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +e+ewyf+s rd+ky+tg r+nr+t sgyWkatgkd+e++s+ + lvglkktLvfy grap+gekt+W++heyrl Spipo0G0076300 7 KLGEREWYFYSLRDRKYPTGLRTNRSTVSGYWKATGKDREIFSSsGALLVGLKKTLVFYLGRAPRGEKTKWILHEYRL 84 55789**************************************845556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.798 | 1 | 105 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-36 | 5 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-13 | 12 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYEDKAKLGE REWYFYSLRD RKYPTGLRTN RSTVSGYWKA TGKDREIFSS SGALLVGLKK 60 TLVFYLGRAP RGEKTKWILH EYRLDGDFSL HDLSDEWVIC RIFHKAGGKK KSPFTSPHSR 120 RRSSHLLQPL PSCFAAPSPL AGVLQHRRQD DRHLLLPNPS SDQPSSSILT QNSLCSPPRQ 180 SEPEELFSSL IGSLPVLAWD SWDSLEHCVM TQQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-33 | 4 | 111 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-33 | 4 | 111 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-33 | 4 | 111 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-33 | 4 | 111 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-33 | 4 | 111 | 67 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-33 | 4 | 111 | 64 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-33 | 4 | 111 | 64 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270533.1 | 1e-58 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 3e-51 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A3S3MK11 | 9e-59 | A0A3S3MK11_9MAGN; NAC domain-containing protein | ||||
STRING | XP_010270533.1 | 4e-58 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-53 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0076300 |
Publications ? help Back to Top | |||
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