PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0076300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 215aa    MW: 24430.7 Da    PI: 9.5847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0076300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.4e-3178452128
             NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k +e+ewyf+s rd+ky+tg r+nr+t sgyWkatgkd+e++s+ +  lvglkktLvfy grap+gekt+W++heyrl
  Spipo0G0076300   7 KLGEREWYFYSLRDRKYPTGLRTNRSTVSGYWKATGKDREIFSSsGALLVGLKKTLVFYLGRAPRGEKTKWILHEYRL 84 
                     55789**************************************845556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.7981105IPR003441NAC domain
SuperFamilySSF1019411.44E-365105IPR003441NAC domain
PfamPF023655.6E-131284IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYEDKAKLGE REWYFYSLRD RKYPTGLRTN RSTVSGYWKA TGKDREIFSS SGALLVGLKK  60
TLVFYLGRAP RGEKTKWILH EYRLDGDFSL HDLSDEWVIC RIFHKAGGKK KSPFTSPHSR  120
RRSSHLLQPL PSCFAAPSPL AGVLQHRRQD DRHLLLPNPS SDQPSSSILT QNSLCSPPRQ  180
SEPEELFSSL IGSLPVLAWD SWDSLEHCVM TQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-33411164171NO APICAL MERISTEM PROTEIN
1ut4_B5e-33411164171NO APICAL MERISTEM PROTEIN
1ut7_A5e-33411164171NO APICAL MERISTEM PROTEIN
1ut7_B5e-33411164171NO APICAL MERISTEM PROTEIN
3swm_A6e-33411167174NAC domain-containing protein 19
3swm_B6e-33411167174NAC domain-containing protein 19
3swm_C6e-33411167174NAC domain-containing protein 19
3swm_D6e-33411167174NAC domain-containing protein 19
3swp_A6e-33411167174NAC domain-containing protein 19
3swp_B6e-33411167174NAC domain-containing protein 19
3swp_C6e-33411167174NAC domain-containing protein 19
3swp_D6e-33411167174NAC domain-containing protein 19
4dul_A5e-33411164171NAC domain-containing protein 19
4dul_B5e-33411164171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270533.11e-58PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8513e-51NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3S3MK119e-59A0A3S3MK11_9MAGN; NAC domain-containing protein
STRINGXP_010270533.14e-58(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-53NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]