PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0060600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | GATA | ||||||||
Protein Properties | Length: 355aa MW: 38188.7 Da PI: 6.6745 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48 | 1.7e-15 | 242 | 278 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Spipo0G0060600 242 CQNCGISEkaTPAMRRGPAGPRSLCNACGLMWANKGT 278 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 10.908 | 82 | 117 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.3E-7 | 84 | 107 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.046 | 171 | 213 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.9E-15 | 171 | 212 | IPR010402 | CCT domain |
SMART | SM00401 | 9.3E-9 | 236 | 290 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.3E-14 | 240 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.66E-10 | 240 | 290 | No hit | No description |
CDD | cd00202 | 3.48E-13 | 241 | 280 | No hit | No description |
Pfam | PF00320 | 2.3E-13 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 242 | 269 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSEASHQEHP QPMYGHEATA GGVEQRAKSI PIRIDDGDGG GVMEDAVAGG WDGGDKMDGV 60 MVEVPEDHEH YADAVDAAMP LTSQTSNQLT LLFQGEAYVF DSVTPEKGHD RSPHRKRNLT 120 KEDQDKMVQA VMLLLGGCEV PTSGGSMALQ CQPENRGLDD ILRRTNIPAK RVASLIRFRE 180 KRKERCFDKK IRYNVRKEVA LRMQRRKGQF AGKADPHDGT AASSSSDPAQ SSNNEALRET 240 KCQNCGISEK ATPAMRRGPA GPRSLCNACG LMWANKGTLR SPMRANKTAP QSSVPSVGQG 300 GESNDVGTGS DNKALIVVGT DHNSVATTAG MSAEGIPGEL HKEELIDEDV KTRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661657.1 | 1e-122 | GATA transcription factor 18-like isoform X2 | ||||
Swissprot | A2XKR7 | 5e-83 | GAT18_ORYSI; GATA transcription factor 18 | ||||
TrEMBL | A0A1D1Z4J9 | 1e-169 | A0A1D1Z4J9_9ARAE; GATA transcription factor 28 | ||||
STRING | XP_008794051.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-56 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0060600 |