PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0052500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Nin-like | ||||||||
Protein Properties | Length: 145aa MW: 16008.7 Da PI: 10.8634 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.9 | 5.4e-25 | 1 | 48 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le++s+yF+ pi+ AAkeL+++lT LK++CR++GI+RWPhRk+ksl Spipo0G0052500 1 MTLEEVSRYFYVPITVAAKELKMGLTQLKKKCRELGIPRWPHRKMKSL 48 689*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.166 | 1 | 68 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-21 | 1 | 48 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MTLEEVSRYF YVPITVAAKE LKMGLTQLKK KCRELGIPRW PHRKMKSLQA LISNVQELGR 60 EDGEMGEMQL QRAIEILEGE RAAMERVPGT QLEERTKRLR QACFKANFKK RRQSKGGVAA 120 AAAAAAAGRR NPVKASCPSA TGVP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020255496.1 | 3e-55 | protein RKD1-like isoform X2 | ||||
Swissprot | Q9M9U9 | 2e-42 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A199VQN9 | 4e-55 | A0A199VQN9_ANACO; Protein RKD1 | ||||
STRING | XP_008802620.1 | 2e-51 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-44 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0052500 |