PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0052100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 34501.7 Da PI: 8.3165 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 95 | 154 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC s+ tkfCyynny+l+qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Spipo0G0052100 95 PEKILPCPRCSSMATKFCYYNNYNLNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHS 154 78999*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 87 | 152 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.7E-32 | 97 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.453 | 99 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 101 | 137 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAGSRGLVKL FGKTIPVPVE VDIQEDPFKE TGGGGGAGGE RGEAEDEDDA GKQLPVLAVE 60 SSGSASDGKS EQRTSSSAGR SLSGGGEKNP KPAKPEKILP CPRCSSMATK FCYYNNYNLN 120 QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKHSAAYCRH ITVVKPPLSP EEHVPVFHAE 180 EKSNSAAGDG WGENAPCFSG NPWACPISVY PMAAYWSVPW MSPSSSPAVG KKHPRQGEAE 240 PERCLWFPKT LRIDDPVEAA KSSIWAAMGL SKDMAARGGL FTGFDQAKNN PSASITEASK 300 VFLANPAAMS RSFSFQESSI LD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 6e-60 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 6e-60 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 6e-60 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q93ZL5 | 9e-56 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A314ZC99 | 1e-67 | A0A314ZC99_PRUYE; Cyclic dof factor 2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-55 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0052100 |
Publications ? help Back to Top | |||
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