PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo0G0051900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 178aa MW: 19279.5 Da PI: 6.9489 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.5 | 4e-20 | 15 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 p l+Wt +LHerF+e+v++LGG+ kAtP+++ +lm+ gLtl+++k LQ kYRl Spipo0G0051900 15 PGLKWTGQLHERFLEVVSRLGGASKATPRSVERLMGASGLTLYQLKIQLQarfKYRL 71 5699**********************************************7777887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 12 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-8 | 13 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-13 | 15 | 67 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 5.2E-14 | 103 | 142 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MVDDQSVAPS SHARPGLKWT GQLHERFLEV VSRLGGASKA TPRSVERLMG ASGLTLYQLK 60 IQLQARFKYR LAVKRSSEAS SHGTEEEGGG GGGSFPGNQR ARQAPMELQR KSEERLEVQR 120 HLQLRIEAQG RYLQSVLERA REMLEMDAAD SQPSPAADAD CLSSDGSCLT ENDGPSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070990.1 | 1e-40 | myb family transcription factor PHL8 | ||||
TrEMBL | A0A1D1XUC7 | 1e-41 | A0A1D1XUC7_9ARAE; Myb family transcription factor APL | ||||
STRING | EOY01900 | 8e-37 | (Theobroma cacao) | ||||
STRING | GSMUA_Achr2P01180_001 | 1e-36 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.3 | 6e-33 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo0G0051900 |