PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0041200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 268aa MW: 29667.2 Da PI: 6.6497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0041200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90.6	2.7e-28	44	124	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++kewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++++ ++ +glkk+Lv+y+g a kg+ktdW+mhe+rl Spipo0G0041200 44 NNHGNKEWYFFCMRGRKYRNSIRPNRVTGSGFWKATGIDRPIYTAgsgGSDCIGLKKSLVYYRGCAGKGTKTDWMMHEFRL 124 344778************************************97766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.092	1	152	IPR003441	NAC domain
Pfam	PF02365	5.6E-13	39	124	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-32	40	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MFFLIEGLVS TGQFYGGGQD PPLPCNPVRF SNQLCSLEDF EGVNNHGNKE WYFFCMRGRK 60 YRNSIRPNRV TGSGFWKATG IDRPIYTAGS GGSDCIGLKK SLVYYRGCAG KGTKTDWMMH 120 EFRLPSGGCG GDDGRGGAQE AEMWTICRIF KRNVSCKRYP QAQRWESPAP AADSGSKTSS 180 ADSDGFWDGV DQYTHPPAPA VLESDFNSPA NQYEEKVQPY QWTSPVQSSA VLLHPNPVHG 240 NDFFLKDGLW DEIDRIAEFS IRLVAAC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-29	47	158	69	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-29	47	158	69	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-29	47	158	69	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-29	47	158	69	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-29	47	158	72	174	NAC domain-containing protein 19
3swm_B	4e-29	47	158	72	174	NAC domain-containing protein 19
3swm_C	4e-29	47	158	72	174	NAC domain-containing protein 19
3swm_D	4e-29	47	158	72	174	NAC domain-containing protein 19
3swp_A	4e-29	47	158	72	174	NAC domain-containing protein 19
3swp_B	4e-29	47	158	72	174	NAC domain-containing protein 19
3swp_C	4e-29	47	158	72	174	NAC domain-containing protein 19
3swp_D	4e-29	47	158	72	174	NAC domain-containing protein 19
4dul_A	4e-29	47	158	69	171	NAC domain-containing protein 19
4dul_B	4e-29	47	158	69	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806688.1	1e-76	transcription factor JUNGBRUNNEN 1-like isoform X1
Swissprot	Q9SK55	1e-53	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2H3Z0S9	2e-75	A0A2H3Z0S9_PHODC; transcription factor JUNGBRUNNEN 1-like isoform X1
STRING	XP_008806688.1	4e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-56	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Spipo0G0041200

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]