PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0001900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 268aa MW: 30101.7 Da PI: 5.2242

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0001900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134	1e-41	4	133	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rF Pt+ elv++yL +k+++++ e++++i+ vd+y+++P +Lp + + + ++w+fF++r++++a+g r++r+t+ gyWkatg+ + Spipo0G0001900 4 LPPGLRFYPTEGELVTFYLWNKLANRSPEMHRFIPVVDVYSFQPMELPpIsgeA-SVrDPEQWFFFCPRQEREAQGGRPTRTTQYGYWKATGSPT 97 79**************************999**********9544432.2224569***************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +v++ +g++vg ++t+vfy+gr p+g+kt+W m+ey+ Spipo0G0001900 98 QVIH-EGRNVGKRTTMVFYEGRPPSGRKTSWKMNEYT 133 .9999*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-47	2	159	IPR003441	NAC domain
PROSITE profile	PS51005	46.567	4	159	IPR003441	NAC domain
Pfam	PF02365	4.6E-21	5	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSSLPPGLRF YPTEGELVTF YLWNKLANRS PEMHRFIPVV DVYSFQPMEL PPISGEASVR 60 DPEQWFFFCP RQEREAQGGR PTRTTQYGYW KATGSPTQVI HEGRNVGKRT TMVFYEGRPP 120 SGRKTSWKMN EYTAYDETST PGATPTLRRE FYLCRLYKKT EGQRSFDRRP TAAAPSTDAG 180 NMKIGVSYTP EQKSFDWGPT VAVASKDAGD MNIGVSDTPA LGNQTRTAAE EELSTSLPNE 240 QEEFWDAFMI MEADGGWSCC LGTDKAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-32	3	159	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-32	3	159	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-32	3	159	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-32	3	159	16	165	NO APICAL MERISTEM PROTEIN
4dul_A	5e-32	3	159	16	165	NAC domain-containing protein 19
4dul_B	5e-32	3	159	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776160.1	8e-75	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	5e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H3WZR8	2e-73	A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like
STRING	XP_008776160.1	3e-74	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-66	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Spipo0G0001900

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]