PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g099900.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 52609.3 Da PI: 6.4502 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 479.8 | 1.4e-146 | 47 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl+cA++v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs+++lykal++++ s +see+ ++k+f+e++P+l Sopim12g099900.0.1 47 LIHLLLACANHVASGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLS--VVSEEILVRKMFFEIFPFL 135 689*************************************************************999998..6****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+fn v Sopim12g099900.0.1 136 KVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQFNQ-V 221 **********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll......................................................desvs 219 ++rle+l++e+Lrvk+gEala+++++qlh+ll +++s Sopim12g099900.0.1 222 VSRLENLDVEKLRVKTGEALAISSIMQLHTLLahdndkksplpfkhsngvnlnralvnqntlgeflekdmangcspsndtasssplCSTGS 312 ******************************************************************************9988555433333 PP GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 + + d++L+++++lsPkv+vv+eq+a+hn+++++er++e+l++y+alfd+le++lpr+s er kvE++llg+ei+n++aceg er+erhe Sopim12g099900.0.1 313 T--KMDSFLNALWGLSPKVMVVTEQDANHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEGIERKERHE 401 3..5699************************************************************************************ PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +lekW +r++++GF++vpls++a+ qa++ll+ ++ +gy+++e++g++v++W+drpL+svS+Wr Sopim12g099900.0.1 402 KLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEDNGCVVICWQDRPLFSVSSWR 465 ***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.762 | 21 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-144 | 47 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPIQVFP MMSVSPSFGS SNQWLKELKS EERGLYLIHL LLACANHVAS 60 GSLENANIAL DHISQLASPS GDTMQRIASY FTEALADRIL RSWPGLYKAL RSTKLSVVSE 120 EILVRKMFFE IFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP 180 EGPPHLRITG VHQQKEVLDQ MAHVLTQEAE KLDIPFQFNQ VVSRLENLDV EKLRVKTGEA 240 LAISSIMQLH TLLAHDNDKK SPLPFKHSNG VNLNRALVNQ NTLGEFLEKD MANGCSPSND 300 TASSSPLCST GSTKMDSFLN ALWGLSPKVM VVTEQDANHN GTTLMERLSE SLHFYAALFD 360 CLESTLPRTS LERLKVEKML LGEEIRNIIA CEGIERKERH EKLEKWFQRF DTSGFGNVPL 420 SYYAMLQARR LLQSYSCEGY KIKEDNGCVV ICWQDRPLFS VSSWRCRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-40 | 29 | 467 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252879.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A3Q7JDZ1 | 0.0 | A0A3Q7JDZ1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g099900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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