PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g099120.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 248aa    MW: 29430.8 Da    PI: 6.1669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g099120.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-172067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd+ l +++  +G g+W++ +r+ g++Rt+k+c++rw++yl
  Sopim12g099120.0.1 20 RGPWTVEEDLVLMNYISHHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 67
                        89********************************************97 PP

2Myb_DNA-binding50.35.5e-1674116246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sopim12g099120.0.1  74 GNITLEEQLLILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                         6779*****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3161567IPR017930Myb domain
SuperFamilySSF466896.36E-3117114IPR009057Homeodomain-like
SMARTSM007171.5E-131969IPR001005SANT/Myb domain
PfamPF002492.0E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222174IPR009057Homeodomain-like
CDDcd001675.23E-92267No hitNo description
PROSITE profilePS5129422.71168122IPR017930Myb domain
SMARTSM007173.8E-1472120IPR001005SANT/Myb domain
PfamPF002498.6E-1574116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2275121IPR009057Homeodomain-like
CDDcd001672.58E-693116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDKLINQENN IDKEIMELRR GPWTVEEDLV LMNYISHHGE GRWNSLSRCA GLKRTGKSCR  60
LRWLNYLRPD VRHGNITLEE QLLILQLHSR WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKQFQDTLRY LWIPRLVERI EASKISNYNC INEAQQSIMR TDINNNFSTS  180
VTLENSSVAT SSENSNQDYN QVNQSDQLWY EDYQAMEQQN NIELWMDNED VFNNLCNNED  240
IWSLLEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251711424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9347340.0EU934734.1 Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314656.10.0ABA-induced MYB transcription factor isoform X1
SwissprotQ10MB42e-87MYB2_ORYSJ; Transcription factor MYB2
TrEMBLC0J8F71e-164C0J8F7_SOLLC; ABA-induced MYB transcription factor
STRINGSolyc12g099120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-85myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]