PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g098520.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 479aa MW: 53447.2 Da PI: 5.4919

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g098520.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.7e-35	19	109	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ Sopim12g098520.0.1 19 FLSKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQKH 100 9**************************************************************999.........********** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i+r+k Sopim12g098520.0.1 101 LLKNIHRRK 109 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.27E-36	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.0E-61	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.7E-38	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.8E-20	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-31	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-20	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-20	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS 120 TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI 180 FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN 240 LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY 300 TPEAIELSDT GTSFMLKMDS SLPRASSNAE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA 360 SCLSQVDKNQ YSARMPQIGQ EIGKRFESQS DANDKIPPTD DKSLPPSHDA TTNKQVPAAA 420 PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS  120
TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI  180
FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN  240
LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY  300
TPEAIELSDT GTSFMLKMDS SLPRASSNAE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA  360
SCLSQVDKNQ YSARMPQIGQ EIGKRFESQS DANDKIPPTD DKSLPPSHDA TTNKQVPAAA  420
PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-24	1	108	12	129	Heat shock factor protein 1
5d5v_B	2e-24	1	108	12	129	Heat shock factor protein 1
5d5v_D	2e-24	1	108	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015059195.1	0.0	heat stress transcription factor A-5 isoform X1
Swissprot	Q94BZ5	1e-161	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A3Q7JEE1	0.0	A0A3Q7JEE1_SOLLC; Uncharacterized protein
STRING	Solyc12g098520.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-163	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]