PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g096070.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 346aa MW: 38590.8 Da PI: 7.5494 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.3 | 3.1e-24 | 71 | 115 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++++++k+CErH+hrgr+rsrk++e+ Sopim12g096070.0.1 71 DPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVES 115 79****************************************986 PP | |||||||
2 | QLQ | 62.7 | 9.8e-22 | 10 | 45 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a+ PvP++L+++i++ Sopim12g096070.0.1 10 PFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRR 45 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.0E-12 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.1E-16 | 10 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.018 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.811 | 71 | 115 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.7E-20 | 72 | 114 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAAENGYRPP FTAVQWQELE HQAMIYKYLV AGIPVPADLV VPIRRSFEPI SARFFHHPSL 60 GYCSYYGKKF DPEPGRCRRT DGKKWRCAKD AYPDSKYCER HMHRGRNRSR KHVESQSTAQ 120 SLLTSMSHNT TGSTTGSSKT SGNFQRNSSE SFQNTPLYSA ANSEGPSYGS ATTKMQMEPP 180 TYAIDSKGYF HGMTADADEQ NFSLEASEGT RSLGMGSNTD SMWCLMPPQL PSSPMVKPKN 240 DSQLLDSSRQ IRMPNPFEPM NDTTISGQHQ HCFFSSDIGS PGTVKQEQRS MRPFFDEWPT 300 TKESWSNLDD EGSNKNNFST TQLSISIPMA PPDFSSRSSC SPNDA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010314818.1 | 0.0 | growth-regulating factor 4 isoform X2 | ||||
TrEMBL | A0A3Q7JCL0 | 0.0 | A0A3Q7JCL0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g096070.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-48 | growth-regulating factor 5 |