PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g089240.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 330aa    MW: 36391.9 Da    PI: 7.3692
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g089240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.8e-08442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ +++ke++ fC+ ++  lC+dC    H+       H
  Sopim12g089240.0.1  4 QCDVCNKKEAIVFCTADEAALCDDCDHRVHHVnklaskH 42
                        7*************************9997323555555 PP
2zf-B_box21.93.6e-075492238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        ++++C+ ++e +  lfC++++  +C++C   +Hk   Ht
  Sopim12g089240.0.1 54 QAPMCDICQERRGFLFCQQDRAIMCRECDIPIHKAneHT 92
                        7899*******9*********************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000218.89E-7347No hitNo description
PfamPF006433.1E-6443IPR000315B-box-type zinc finger
SMARTSM003367.2E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.62753100IPR000315B-box-type zinc finger
SMARTSM003363.8E-1453100IPR000315B-box-type zinc finger
PfamPF006431.4E-55492IPR000315B-box-type zinc finger
CDDcd000214.38E-95692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKIQCDVCNK KEAIVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLVQP SPKQAPMCDI  60
CQERRGFLFC QQDRAIMCRE CDIPIHKANE HTQKHNRYLL TGIKLSANSA LYSAPSQSQS  120
QSQSAISSAD SCVSNLKSKD STSKPVAGSV FVSPAIISNS TKGGAVSSAV ESVKVVKEKV  180
GGCNNNVQFV NGGGNNLTSS ISEYLEMLPG WHVEDFLDCS TPNVYSKNIG DEDMLSFWDT  240
DLESQFSSFP PQNVGIWVPQ APPLQESKQE TQIQFFPSQN LNFGGQIGLK ESREVTNIKS  300
SRKWTDDNSF AVPQMKPPST SFKRTRTLW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252795.10.0B-box zinc finger protein 20
TrEMBLA0A3Q7JC340.0A0A3Q7JC34_SOLLC; Uncharacterized protein
STRINGSolyc12g089240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-53DBB family protein