PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g087830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22643.3 Da PI: 8.9663 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82 | 3.9e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss Sopim12g087830.0.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 40.7 | 1e-14 | 81 | 167 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +ae e++ e Lq++ R+l + + L+l +L +Le++L+++l + R++K++l+le+ + l +kek l ee+k L+ +++ Sopim12g087830.0.1 81 NAEIQVAEVSGFTTMGELLQTTERQLEETNADGLTLTDLIHLENELQTALIHLRARKTHLMLESAKVLHEKEKLLLEEKKHLEDNIA 167 555556677777888899****************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.525 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-28 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.28E-33 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.3E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.001 | 82 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-11 | 86 | 166 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN 60 NSMTAMLRRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ TTERQLEETN ADGLTLTDLI 120 HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLLEEKK HLEDNIASIK KNTKVNEMSD 180 LPAPHMICGQ QKVTLNFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_B | 4e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_C | 4e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_D | 4e-16 | 1 | 84 | 1 | 84 | MEF2C |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 2e-98 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352612.1 | 1e-143 | MADS-box transcription factor | ||||
TrEMBL | A0A3Q7JXP0 | 1e-142 | A0A3Q7JXP0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g087830.1.1 | 1e-143 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 3e-32 | MIKC_MADS family protein |