PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g056980.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 33663.7 Da PI: 8.8985 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.1e-21 | 124 | 174 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Sopim12g056980.0.1 124 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 174 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-34 | 123 | 183 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-23 | 124 | 182 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 124 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 124 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-38 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-14 | 125 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MATSTMDFWT TTLLDLNSSN SGGELMEALA PFIKSASSPS PSPSVSPSFD LQSSSLSTSF 60 LYESFSSTSQ PNMSSIGLNQ AQIYLSQQVM PAVTFQNNNQ YASYLGPKPV SMKQTGSPPK 120 PPKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF 180 PHLRHNGSLI GSEFGEYKPL HSSVNAKLQA ICQDLAQGKS IDTKKKRKVS SKAMMVEVEE 240 KEYKKSKTTA EAGSESDGSG SGSGSGSGSG SSPISEYTFD SIWDMCSENY VLHKDPSQEI 300 FNWASLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 123 | 181 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | KKKRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252538.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q8H1E4 | 2e-74 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | K4DG29 | 0.0 | K4DG29_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g056980.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-52 | related to AP2 4 |
Publications ? help Back to Top | |||
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