PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g056430.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22987.8 Da PI: 5.7436 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 42 | 93 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ++GVr + + +Wv+eIr+p++ +kr++lg++ tae+Aa+a++ a+++l+ge Sopim12g056430.0.1 42 PVFRGVRKRD-NDKWVCEIREPTK---QKRIWLGTYLTAEMAARAHDVAALALKGE 93 579****999.8*********964...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-11 | 42 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.758 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-29 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-26 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 43 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-6 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.89E-27 | 44 | 102 | No hit | No description |
PRINTS | PR00367 | 1.5E-6 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNNSSNSCSS IPSDEGSIIL ESSNKSKKRA AGRKKFKETR HPVFRGVRKR DNDKWVCEIR 60 EPTKQKRIWL GTYLTAEMAA RAHDVAALAL KGELAKLNFA DSAWRLQVPV SKDPKELRQA 120 AARAVEAFEN VREVAPQENN IVVDCNMMVD ENNNSNSCGI EEWVANMEEE SLFSPNPCLF 180 GSHFNWDDHV ESDVEVSLWN YTI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884427.1 | 1e-149 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 2e-50 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A3Q7JAC1 | 1e-148 | A0A3Q7JAC1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g056430.1.1 | 1e-149 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 5e-40 | ERF family protein |