PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g043090.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 376aa MW: 42886.9 Da PI: 4.6325

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g043090.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	137	221	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L++a + r +r++l+ W+ev++++ r ++er+ +qC+++++ l+k+ykk+k + t s+s+++yf++++ Sopim12g043090.0.1 137 WSENETFILLDAWGTRFVRHGRKSLRSEEWQEVADRVsRGSKIERTDTQCRNRLDTLKKKYKKEKMKFAE-TGSSTSKWVYFKKMD 221 ***********************************566788******************99998.5777789*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.214	135	194	IPR017877	Myb-like domain
Pfam	PF13837	6.2E-21	136	223	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-4	137	202	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDDIEDNGRY PSNPYGMNQG YESSNRQKLP VHDPSYSRHV DNQYVEEADD DEEVDGEEEE 60 EDDDGEENGV QRIGKDVFDD DDDDDDEYGD LQRHQKKRKL KSLLSSYEFA PRVPPPSTTA 120 ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE 180 RTDTQCRNRL DTLKKKYKKE KMKFAETGSS TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG 240 EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEEDGSEDL PPKRSRNVQP GGNGNGNGHS 300 FKLIADSIHK FSEIYVKIEN SKRQQMMELE KMRMDFHREL ELQKRQIMER AQAEIARIRQ 360 GSDEENDMSA ENVSG*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDDIEDNGRY PSNPYGMNQG YESSNRQKLP VHDPSYSRHV DNQYVEEADD DEEVDGEEEE  60
EDDDGEENGV QRIGKDVFDD DDDDDDEYGD LQRHQKKRKL KSLLSSYEFA PRVPPPSTTA  120
ATAPKPSFGG RNPLSDWSEN ETFILLDAWG TRFVRHGRKS LRSEEWQEVA DRVSRGSKIE  180
RTDTQCRNRL DTLKKKYKKE KMKFAETGSS TSKWVYFKKM DMLLTSTPQK AGVSCGMDSG  240
EYVFMSPKAY LNRANGLDEM RDSPANSESA DGEEDGSEDL PPKRSRNVQP GGNGNGNGHS  300
FKLIADSIHK FSEIYVKIEN SKRQQMMELE KMRMDFHREL ELQKRQIMER AQAEIARIRQ  360
GSDEENDMSA ENVSG*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252336.1	0.0	trihelix transcription factor ASIL1
Refseq	XP_004252337.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A0V0ISR2	0.0	A0A0V0ISR2_SOLCH; Putative ovule protein
STRING	Solyc12g043090.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-66	Trihelix family protein